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PMID: 266187 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Secondary structural complementarity between DNA and proteins.

Church GM, Sussman JL, Kim SH

Abstract

A model for the complex between double-stranded DNA and a beta-ribbon (a two-stranded antiparallel beta-sheet) of proteins is proposed as one of the possible modes of structural recognition between DNA and proteins. In this model, the contact occurs on the narrow groove of DNA, and the symmetry elements as well as the repeat distances of DNA and the beta-ribbon coincide, thus providing favorable complementary contacts.

MeSH Terms
Binding Sites DNA Hydrogen Bonding Models, Molecular Nucleic Acid Conformation Protein Binding Protein Conformation Proteins
Chemicals
Proteins DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Church G M
Sussman J L
Kim S H
References (14)
14 references, click to expand
  1. Conformation of twisted beta-pleated sheets in proteins.
    J Mol Biol. 1973 Apr 5;75(2):295-302 PMID: 4728692
  2. Optimised parameters for A-DNA and B-DNA.
    Biochem Biophys Res Commun. 1972 Jun 28;47(6):1504-9 PMID: 5040245
  3. Lac repressor-operator interaction. I. Equilibrium studies.
    J Mol Biol. 1970 Feb 28;48(1):67-83 PMID: 4915295
  4. Conformation of polypeptides and proteins.
    Adv Protein Chem. 1968;23:283-438 PMID: 4882249
  5. Conformational prediction and circular dichroism studies on the lac repressor.
    J Mol Biol. 1975 Jul 25;96(1):29-45 PMID: 1099214
  6. Preferential protection of the minor groove of non-operator DNA by lac repressor against methylation by dimethyl sulphate.
    Nucleic Acids Res. 1976 Jan;3(1):11-8 PMID: 1250692
  7. Refinement of bond angles of an alpha-helix.
    J Mol Biol. 1967 Nov 28;30(1):209-12 PMID: 6077935
  8. Polymorphism of natural DNA.
    Nat New Biol. 1972 Oct 4;239(92):128-31 PMID: 4349669
  9. Stereochemistry of actinomycin binding to DNA. II. Detailed molecular model of actinomycin-DNA complex and its implications.
    J Mol Biol. 1972 Jul 14;68(1):21-34 PMID: 4115109
  10. Stereochemistry of actinomycin binding to DNA. I. Refinement and further structural details of the actinomycin-deoxyguanosine crystalline complex.
    J Mol Biol. 1972 Jul 14;68(1):1-20 PMID: 4115108
  11. Altered sequences changing the operator-binding properties of the Lac repressor: colinearity of the repressor protein with the i-gene map.
    Proc Natl Acad Sci U S A. 1972 Dec;69(12):3624-8 PMID: 4566452
  12. Lac repressor. Specific proteolytic destruction of the NH 2 -terminal region and loss of the deoxyribonucleic acid-binding activity.
    J Biol Chem. 1973 Jan 10;248(1):110-21 PMID: 4571224
  13. How lac repressor binds to DNA.
    Nature. 1972 Jun 9;237(5354):322-7 PMID: 4557395
  14. A proposed model for interaction of polypeptides with RNA.
    Proc Natl Acad Sci U S A. 1974 Feb;71(2):283-7 PMID: 4521801
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1977-04-00
Pages
1458-62
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC430798
Subset
IM
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