Home LiteratureArticle Details
PMID: 2670913 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Molecular cloning of the structural gene for alkaline elastase YaB, a new subtilisin produced by an alkalophilic Bacillus strain.

Journal of bacteriology ·Vol. 171 ·No. 9 ·1989-09-00 ·Pages 5232-6

Kaneko R, Koyama N, Tsai YC, Juang RY, Yoda K, Yamasaki M

Abstract

Alkaline elastase YaB is an extracellular serine protease of the alkalophilic Bacillus strain YaB. We cloned the structural gene, ale, and determined the nucleotide sequence. The mature enzyme (268 amino acids) was preceded by a putative signal sequence and a prosequence (27 and 83 amino acids, respectively). The mature enzyme was 55% homologous to subtilisin BPN'. Almost all the positively charged residues are predicted to be on the surface of the molecule, which would facilitate binding to elastin. The P1 substrate site-related sequences differed between alkaline elastase YaB and subtilisin BPN'.

MeSH Terms
Amino Acid Sequence Bacillus/enzymology,genetics Base Sequence Cloning, Molecular Genes Genes, Bacterial Genetic Vectors Hydrogen-Ion Concentration Molecular Sequence Data Plasmids Sequence Homology, Nucleic Acid Subtilisins/genetics
Chemicals
Subtilisins alkaline elastase YaB
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Kaneko R
Department of Agricultural Chemistry, University of Tokyo, Japan.
Koyama N
Tsai Y C
Juang R Y
Yoda K
Yamasaki M
References (28)
28 references, click to expand
  1. Determination of the signal peptidase cleavage site in the preprosubtilisin of Bacillus subtilis.
    J Biol Chem. 1986 Aug 5;261(22):10176-81 PMID: 3090033
  2. Elastolytic properties of various proteinases from microbial origin.
    Arch Biochem Biophys. 1967 Apr;120(1):68-78 PMID: 4963391
  3. Translational initiation in prokaryotes.
    Annu Rev Microbiol. 1981;35:365-403 PMID: 6170248
  4. Probing steric and hydrophobic effects on enzyme-substrate interactions by protein engineering.
    Science. 1986 Aug 8;233(4764):659-63 PMID: 17835820
  5. Substrate specificity of a new alkaline elastase from an alkalophilic bacillus.
    Biochem Int. 1984 Feb;8(2):283-8 PMID: 6566572
  6. Construction of a Bacillus subtilis double mutant deficient in extracellular alkaline and neutral proteases.
    J Bacteriol. 1984 Oct;160(1):442-4 PMID: 6434524
  7. Proteolysis of insoluble elastin.
    Methods Enzymol. 1982;82 Pt A:588-605 PMID: 7043210
  8. Dissecting the catalytic triad of a serine protease.
    Nature. 1988 Apr 7;332(6164):564-8 PMID: 3282170
  9. Effects of the complete removal of basic amino acid residues from the signal peptide on secretion of lipoprotein in Escherichia coli.
    J Biol Chem. 1983 Jun 10;258(11):7141-8 PMID: 6343386
  10. Compilation of published signal sequences.
    Nucleic Acids Res. 1984 Jul 11;12(13):5145-64 PMID: 6379599
  11. Production and further characterization of an alkaline elastase produced by alkalophilic bacillus strain ya-B.
    Appl Environ Microbiol. 1988 Dec;54(12):3156-61 PMID: 16347804
  12. Structure of subtilisin BPN' at 2.5 angström resolution.
    Nature. 1969 Jan 18;221(5177):235-42 PMID: 5763076
  13. Nucleotide sequence of the gene for aqualysin I (a thermophilic alkaline serine protease) of Thermus aquaticus YT-1 and characteristics of the deduced primary structure of the enzyme.
    Eur J Biochem. 1988 May 2;173(3):491-7 PMID: 3286255
  14. Cloning, sequencing, and secretion of Bacillus amyloliquefaciens subtilisin in Bacillus subtilis.
    Nucleic Acids Res. 1983 Nov 25;11(22):7911-25 PMID: 6316278
  15. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  16. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  17. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  18. Replacement of the Bacillus subtilis subtilisin structural gene with an In vitro-derived deletion mutation.
    J Bacteriol. 1984 May;158(2):411-8 PMID: 6427178
  19. Specificity of alkaline elastase Bacillus on the oxidized insulin A- and B-chains.
    J Biochem. 1988 Sep;104(3):416-20 PMID: 3071529
  20. Secretion and autoproteolytic maturation of subtilisin.
    Proc Natl Acad Sci U S A. 1986 May;83(10):3096-100 PMID: 3517850
  21. Characterization of translational initiation sites in E. coli.
    Nucleic Acids Res. 1982 May 11;10(9):2971-96 PMID: 7048258
  22. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  23. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  24. Cloning, sequencing and expression of subtilisin Carlsberg from Bacillus licheniformis.
    Nucleic Acids Res. 1985 Dec 20;13(24):8913-26 PMID: 3001653
  25. Comparative studies on extracellular penicillinases of the same structural gene, penP, expressed in Bacillus licheniformis and Bacillus subtilis.
    J Gen Microbiol. 1983 Aug;129(8):2621-8 PMID: 6415232
  26. Purification and characterization of aqualysin I (a thermophilic alkaline serine protease) produced by Thermus aquaticus YT-1.
    Eur J Biochem. 1988 Feb 1;171(3):441-7 PMID: 3162211
  27. Secretion and membrane localization of proteins in Escherichia coli.
    CRC Crit Rev Biochem. 1980;7(4):339-71 PMID: 6993100
  28. A new alkaline elastase of an alkalophilic bacillus.
    Biochem Int. 1983 Nov;7(5):577-83 PMID: 6385982
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1989-09-00
Pages
5232-6
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC210351
Subset
IM
Databases
GENBANK
M28537
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]