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PMID: 27014417 已发表 · epublish 英语

Insights into the single cell draft genome of "Candidatus Achromatium palustre".

Standards in genomic sciences ·第 11 卷 ·2016-03-25

Salman Verena, Berben Tom, Bowers Robert M, Woyke Tanja, Teske Andreas, Angert Esther R

摘要

"Candidatus Achromatium palustre" was recently described as the first marine representative of the Achromatium spp. in the Thiotrichaceae - a sister lineage to the Chromatiaceae in the Gammaproteobacteria. Achromatium spp. belong to the group of large sulfur bacteria as they can grow to nearly 100 μm in size and store elemental sulfur (S(0)) intracellularly. As a unique feature, Achromatium spp. can accumulate colloidal calcite (CaCO3) inclusions in great amounts. Currently, both process and function of calcite accumulation in bacteria is unknown, and all Achromatium spp. are uncultured. Recently, three single-cell draft genomes of Achromatium spp. from a brackish mineral spring were published, and here we present the first draft genome of a single "Candidatus Achromatium palustre" cell collected in the sediments of the Sippewissett Salt Marsh, Cape Cod, MA. Our draft dataset consists of 3.6 Mbp, has a G + C content of 38.1 % and is nearly complete (83 %). The next closest relative to the Achromatium spp. genomes is Thiorhodovibrio sp. 907 of the family Chromatiaceae, containing phototrophic sulfide-oxidizing bacteria.

关键词
Calcium carbonate Large sulfide-oxidizing bacteria Sippewissett Salt Marsh Thiotrichaceae “Candidatus Achromatium palustre”
文献信息
期刊
Standards in genomic sciences
期刊简称
Stand Genomic Sci
发表日期
2016-03-25
收录日期
2016-03-25
更新日期
2016-11-22
语言
英语
国家/地区
England
NLM ID
101530505
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