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PMID: 27922628 Published · epublish English Dataset Journal Article Research Support, Non-U.S. Gov't

A chromosome-level genome assembly of the Asian arowana, Scleropages formosus.

Scientific data ·Vol. 3 ·2016-00-06 ·Pages 160105

Li J, Bian C, Hu Y, Mu X, Shen X, Ravi V, Kuznetsova IS, Sun Y, You X, Qiu Y, Zhang X, Yu H, Huang Y, Xu P, Gu R, Xu J, Orbán L, Venkatesh B, Shi Q

Abstract

Asian arowana (Scleropages formosus), an ancient teleost belonging to the Order Osteoglossomorpha, has been a valuable ornamental fish with some varieties. However, its biological studies and breeding germplasm have been remarkably limited by the lack of a reference genome. To solve these problems, here we report high-quality genome sequences of three common varieties of Asian arowana (the golden, red and green arowana). We firstly generated a chromosome-level genome assembly of the golden arowana, on basis of the genetic linkage map constructed with the restriction site-associated DNA sequencing (RAD-seq). In addition, we obtained draft genome assemblies of the red and green varieties. Finally, we annotated 22,016, 21,256 and 21,524 protein-coding genes in the genome assemblies of golden, red and green varieties respectively. Our data were deposited in publicly accessible repositories to promote biological research and molecular breeding of Asian arowana.

MeSH Terms
Animals Chromosome Mapping Chromosomes/genetics DNA Shuffling Fishes/genetics Genetic Linkage Genome Sequence Analysis, DNA
Authors & Affiliations
19 authors, click to expand affiliations / ORCID
Li Jia
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Bian Chao ORCID
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Hu Yinchang
Key Laboratory of Tropical &Subtropical Fishery Resource Application &Cultivation, Ministry of Agriculture, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510380, China.
Mu Xidong
Key Laboratory of Tropical &Subtropical Fishery Resource Application &Cultivation, Ministry of Agriculture, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510380, China.
Shen Xueyan
Reproductive Genomics Group, Temasek Life Sciences Laboratory, Singapore 117604, Singapore.
Ravi Vydianathan ORCID
Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore 138673, Singapore.
Kuznetsova Inna S
Reproductive Genomics Group, Temasek Life Sciences Laboratory, Singapore 117604, Singapore. | Laboratory of Chromosome Structure and Function, Department of Cytology and Histology, Biological Faculty, Saint Petersburg State University, Saint-Petersburg 198504, Russia.
Sun Ying
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
You Xinxin
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Qiu Ying
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Zhang Xinhui
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Yu Hui
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Huang Yu
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China.
Xu Pao
Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China.
Gu Ruobo
Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China. | BGI-Zhenjiang Institute of Hydrobiology, Zhenjiang 212000, China.
Xu Junmin
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China. | BGI-Zhenjiang Institute of Hydrobiology, Zhenjiang 212000, China.
Orbán László
Reproductive Genomics Group, Temasek Life Sciences Laboratory, Singapore 117604, Singapore.
Venkatesh Byrappa
Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore 138673, Singapore.
Shi Qiong
Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China. | BGI-Zhenjiang Institute of Hydrobiology, Zhenjiang 212000, China. | Marine Research Center, College of Life Sciences, Shenzhen University, Shenzhen 518060, China.
Conflict of Interest

The authors declare no competing financial interests.

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Article Info
Journal
Scientific data
Abbr.
Sci Data
ISSN
2052-4463
Published
2016-00-06
Epub
2016-00-06
Pages
160105
Language
English
Region
England
NLM ID
101640192
PMCID
PMC5139669
Subset
IM
Analysis Services
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