Home LiteratureArticle Details
PMID: 2798122 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Phylogenetic evidence of a role for 5-hydroxymethyluracil-DNA glycosylase in the maintenance of 5-methylcytosine in DNA.

Nucleic acids research ·Vol. 17 ·No. 19 ·1989-10-11 ·Pages 7653-61

Boorstein RJ, Chiu LN, Teebor GW

Abstract

5-Hydroxymethyluracil (HmUra) is formed in DNA as a product of oxidative attack on the methyl group of thymine. It is also the product of the deamination of 5-hydroxymethylcytosine (HmCyt) which may be formed via oxidation of 5-methylcytosine (MeCyt). HmUra is removed from DNA by a DNA glycosylase which, together with HmCyt-DNA glycosylase, is unique among DNA repair enzymes in being present in mammalian cells but absent from bacteria and yeast. We found HmUra-DNA glycosylase activity in a wide variety of vertebrate and invertebrate animals (except Drosophila) and in protozoans. In most vertebrate organisms the highest specific activity was in nervous and immune system tissue. The phylogenetic distribution of HmUra-DNA glycosylase correlates with the presence of 5-methylcytosine (MeCyt) as a regulator of gene expression. This distribution of activity supports the contention that HmUra-DNA glycosylase aids in the maintenance of methylated sites in DNA.

MeSH Terms
5-Methylcytosine Animals Cytosine/analogs & derivatives,analysis DNA/analysis Humans Invertebrates Phylogeny Species Specificity Vertebrates
Chemicals
5-Methylcytosine Cytosine DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Boorstein R J
Department of Pathology, NYU Medical Center, NY 10016.
Chiu L N
Teebor G W
References (50)
50 references, click to expand
  1. Rare bases in animal DNA.
    Nature. 1970 Mar 7;225(5236):948-9 PMID: 4391887
  2. Genetic control of the secondary modification of deoxyribonucleic acid in Escherichia coli.
    J Bacteriol. 1970 Oct;104(1):57-62 PMID: 4919756
  3. Methylation of parental and progeny DNA strands in Physarum polycephalum.
    J Mol Biol. 1973 Mar 15;74(4):563-72 PMID: 4738114
  4. Methylated bases in DNA from Paramecium aurelia.
    Biochim Biophys Acta. 1974 Nov 20;374(1):1-11 PMID: 4429738
  5. N-Glycosidase activity in extracts of Bacillus subtilis and its inhibition after infection with bacteriophage PBS2.
    J Virol. 1975 Aug;16(2):315-21 PMID: 807745
  6. Heat mutagenesis in bacteriophage T4: the transition pathway.
    Proc Natl Acad Sci U S A. 1976 Apr;73(4):1269-73 PMID: 4797
  7. Structure of animal mitochondrial DNA (base composition, pyrimidine clusters, character of methylation).
    Biochim Biophys Acta. 1977 Mar 18;475(2):323-36 PMID: 843531
  8. Radiation-induced degradation of the base component in DNA and related substances--final products.
    Mol Biol Biochem Biophys. 1978;27:171-203 PMID: 651861
  9. Modified bases in the DNAs of unicellular eukaryotes: an examination of distributions and possible roles, with emphasis on hydroxymethyluracil in dinoflagellates.
    Biosystems. 1978 Apr;10(1-2):37-53 PMID: 566131
  10. Comparative study of DNA methylation in three unicellular eucaryotes.
    J Bacteriol. 1978 Sep;135(3):1156-7 PMID: 99431
  11. Serologic assay of DNA base damage. I. 5-Hydroxymethyldeoxyuridine, a radiation product of thymidine.
    Radiat Res. 1978 Aug;75(2):305-16 PMID: 568811
  12. Macronuclear DNA of the hypotrichous ciliate Oxytricha fallax.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4992-6 PMID: 105360
  13. DNA glycosylases, endonucleases for apurinic/apyrimidinic sites, and base excision-repair.
    Prog Nucleic Acid Res Mol Biol. 1979;22:135-92 PMID: 392601
  14. DNA methylation and gene function.
    Science. 1980 Nov 7;210(4470):604-10 PMID: 6254144
  15. Sequential stimulation of DNA repair and DNA replication in normal human cells.
    Mutat Res. 1980 Sep;72(2):273-84 PMID: 7442696
  16. 5-Methylcytosine in eukaryotic DNA.
    Science. 1981 Jun 19;212(4501):1350-7 PMID: 6262918
  17. Methylated bases in the DNA of the ciliate Stylonychia mytilus.
    Eur J Cell Biol. 1981 Apr;24(1):154-6 PMID: 6786890
  18. Stimulation of the nuclear uracil DNA glycosylase in proliferating human fibroblasts.
    Cancer Res. 1981 Aug;41(8):3133-6 PMID: 7248970
  19. Cell cycle regulation of DNA repair in normal and repair deficient human cells.
    Chem Biol Interact. 1981 Jul;36(1):19-31 PMID: 7249149
  20. Activity of uracil-DNA glycosylase in different rat tissues and in regenerating rat liver.
    FEBS Lett. 1982 Jan 25;137(2):193-5 PMID: 7060730
  21. 5,6-Saturated thymine lesions in DNA: production by ultraviolet light or hydrogen peroxide.
    Nucleic Acids Res. 1982 Jun 25;10(12):3781-9 PMID: 7111022
  22. DNA repair enzymes.
    Annu Rev Biochem. 1982;51:61-87 PMID: 6287922
  23. The absence of detectable methylated bases in Drosophila melanogaster DNA.
    FEBS Lett. 1982 Sep 6;146(1):148-52 PMID: 6814955
  24. The occurrence of 6-methylaminopurine in deoxyribonucleic acids.
    Biochem J. 1958 Apr;68(4):627-36 PMID: 13522672
  25. The new occurrence of a new pyrimidine base replacing thymine in a bacteriophage DNA:5-hydroxymethyl uracil.
    J Mol Biol. 1962 Aug;5:248-50 PMID: 13961966
  26. Resistance of bacteriophage H1 to restriction and modification by Bacillus subtilis R.
    J Virol. 1983 Jun;46(3):703-8 PMID: 6406685
  27. The initiation of DNA excision-repair.
    Adv Cancer Res. 1983;38:23-59 PMID: 6308971
  28. DNA methylation and gene activity.
    Annu Rev Biochem. 1983;52:93-124 PMID: 6311083
  29. Characterization of the Escherichia coli X-ray endonuclease, endonuclease III.
    Biochemistry. 1983 Aug 16;22(17):4071-81 PMID: 6351916
  30. Ionizing radiation and tritium transmutation both cause formation of 5-hydroxymethyl-2'-deoxyuridine in cellular DNA.
    Proc Natl Acad Sci U S A. 1984 Jan;81(2):318-21 PMID: 6582490
  31. DNA glycosylase activities for thymine residues damaged by ring saturation, fragmentation, or ring contraction are functions of endonuclease III in Escherichia coli.
    J Biol Chem. 1984 May 10;259(9):5543-8 PMID: 6371006
  32. DNA methylation in the fungi.
    J Biol Chem. 1984 Jul 10;259(13):8033-6 PMID: 6330093
  33. Hydroxymethyluracil DNA glycosylase in mammalian cells.
    Proc Natl Acad Sci U S A. 1984 Jul;81(13):4003-7 PMID: 6588376
  34. 5'-Methyl-cytosine in the macronuclear DNA of Blepharisma japonicum.
    Experientia. 1984 Dec 15;40(12):1401-3 PMID: 6210211
  35. One role for DNA methylation in vertebrate cells is strand discrimination in mismatch repair.
    Proc Natl Acad Sci U S A. 1985 Nov;82(21):7350-4 PMID: 2997788
  36. Quantitative determination of the 5-(hydroxymethyl)uracil moiety in the DNA of gamma-irradiated cells.
    Biochemistry. 1985 Aug 13;24(17):4527-33 PMID: 3904829
  37. Mechanism of action of a mammalian DNA repair endonuclease.
    Biochemistry. 1986 Apr 22;25(8):2212-20 PMID: 2423122
  38. The growing immunoglobulin gene superfamily.
    Nature. 1986 Sep 4-10;323(6083):15-6 PMID: 3748173
  39. Drosophila deoxyuridine triphosphatase. Purification and characterization.
    J Biol Chem. 1987 Jan 5;262(1):130-4 PMID: 3025197
  40. 5-Hydroxymethyluracil-DNA glycosylase activity may be a differentiated mammalian function.
    Mutat Res. 1987 May;183(3):257-63 PMID: 3553917
  41. Definitive characterization of human thymine glycol N-glycosylase activity.
    Biochemistry. 1987 Mar 24;26(6):1683-8 PMID: 3297132
  42. A specific mismatch repair event protects mammalian cells from loss of 5-methylcytosine.
    Cell. 1987 Sep 11;50(6):945-50 PMID: 3040266
  43. 5-Hydroxymethylcytosine DNA glycosylase activity in mammalian tissue.
    Biochem Biophys Res Commun. 1988 Mar 30;151(3):1173-9 PMID: 3355548
  44. The repairability of oxidative free radical mediated damage to DNA: a review.
    Int J Radiat Biol. 1988 Aug;54(2):131-50 PMID: 2900272
  45. Mutagenicity of 5-hydroxymethyl-2'-deoxyuridine to Chinese hamster cells.
    Cancer Res. 1988 Oct 1;48(19):5466-70 PMID: 3416303
  46. DNA repair enzymes.
    Annu Rev Biochem. 1988;57:29-67 PMID: 3052275
  47. AP endonucleases and DNA glycosylases that recognize oxidative DNA damage.
    Environ Mol Mutagen. 1988;12(4):431-77 PMID: 2461302
  48. A human 200-kDa protein binds selectively to DNA fragments containing G.T mismatches.
    Proc Natl Acad Sci U S A. 1988 Dec;85(23):8860-4 PMID: 3194394
  49. In vitro correction of G.T mispairs to G.C pairs in nuclear extracts from human cells.
    Nature. 1989 May 18;339(6221):234-6 PMID: 2716851
  50. Purification and characterization of 5-hydroxymethyluracil-DNA glycosylase from calf thymus. Its possible role in the maintenance of methylated cytosine residues.
    J Biol Chem. 1989 Aug 5;264(22):13306-12 PMID: 2473989
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1989-10-11
Pages
7653-61
Language
English
Region
England
NLM ID
0411011
PMCID
PMC334874
Subset
IM
Grants
NIADDK NIH HHS · AM 07421 · United States
NCI NIH HHS · CA49869 · United States
NIEHS NIH HHS · ES 03857 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]