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PMID: 2832737 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Premature translation termination mediates triosephosphate isomerase mRNA degradation.

Molecular and cellular biology ·Vol. 8 ·No. 2 ·1988-02-00 ·Pages 802-13

Daar IO, Maquat LE

Abstract

We characterized an anemia-inducing mutation in the human gene for triosephosphate isomerase (TPI) that resulted in the production of prematurely terminated protein and mRNA with a reduced cytoplasmic half-life. The mutation converted a CGA arginine codon to a TGA nonsense codon and generated a protein of 188 amino acids, instead of the usual 248 amino acids. To determine how mRNA primary structure and translation influence mRNA stability, in vitro-mutagenized TPI alleles were introduced into cultured L cells and analyzed for their effect on TPI RNA metabolism. Results indicated that mRNA stability is decreased by all nonsense and frameshift mutations. To determine the relative contribution of the changes in mRNA structure and translation to the altered half-life, the effects of individual mutations were compared with the effects of second-site reversions that restored translation termination to normal. All mutations that resulted in premature translation termination reduced the mRNA half-life solely or mainly by altering the length of the mRNA that was translated. The only mutation that altered translation termination and that reduced the mRNA half-life mainly by affecting the mRNA structure was an insertion that shifted termination to a position downstream of the normal stop codon.

MeSH Terms
Alleles Amino Acid Sequence Animals Base Sequence Carbohydrate Epimerases/genetics Cell Line DNA Restriction Enzymes Genes Humans Molecular Sequence Data Mutation Peptide Chain Termination, Translational Plasmids RNA, Messenger/genetics,metabolism Triose-Phosphate Isomerase/genetics
Chemicals
RNA, Messenger DNA Restriction Enzymes Carbohydrate Epimerases Triose-Phosphate Isomerase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Daar I O
Department of Human Genetics, Roswell Park Memorial Institute, Buffalo, New York 14263.
Maquat L E
References (55)
55 references, click to expand
  1. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  2. Definition and mapping of adenovirus 2 nuclear transcription.
    Methods Enzymol. 1980;65(1):768-85 PMID: 6246373
  3. Primary structure of triosephosphate isomerase from Bacillus stearothermophilus.
    Eur J Biochem. 1980 Jul;108(2):599-611 PMID: 6105959
  4. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
  5. Structure of mouse metallothionein-I gene and its mRNA.
    Nature. 1981 Jul 16;292(5820):267-9 PMID: 7254320
  6. On the three-dimensional structure and catalytic mechanism of triose phosphate isomerase.
    Philos Trans R Soc Lond B Biol Sci. 1981 Jun 26;293(1063):159-71 PMID: 6115415
  7. Nonsense and frameshift mutations in beta 0-thalassemia detected in cloned beta-globin genes.
    J Biol Chem. 1981 Oct 10;256(19):9782-4 PMID: 6985481
  8. beta zero thalassemia in Sardinia is caused by a nonsense mutation.
    J Clin Invest. 1981 Oct;68(4):1012-7 PMID: 6457059
  9. Structure and expression of a cloned beta o thalassaemic globin gene.
    Nucleic Acids Res. 1981 Sep 11;9(17):4391-401 PMID: 6272205
  10. Thalassemia revisited.
    Cell. 1982 May;29(1):7-9 PMID: 6179632
  11. Triosephosphate isomerase deficiency. A case report with neuropathological findings.
    Am J Dis Child. 1982 Sep;136(9):800-2 PMID: 7114003
  12. Nucleotide sequences involved in bacteriophage T4 gene 32 translational self-regulation.
    Proc Natl Acad Sci U S A. 1982 Aug;79(16):4937-41 PMID: 6289325
  13. mRNA-deficient beta o-thalassemia results from a single nucleotide deletion.
    Nucleic Acids Res. 1982 Sep 25;10(18):5421-7 PMID: 6292840
  14. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  15. Nucleotide sequence of the triose phosphate isomerase gene of Saccharomyces cerevisiae.
    J Mol Appl Genet. 1982;1(5):419-34 PMID: 6759603
  16. A lymphocyte-specific cellular enhancer is located downstream of the joining region in immunoglobulin heavy chain genes.
    Cell. 1983 Jul;33(3):729-40 PMID: 6409418
  17. Human beta and delta globin messenger RNAs turn over at different rates.
    J Mol Biol. 1983 Jul 5;167(3):607-17 PMID: 6876159
  18. Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors.
    Methods Enzymol. 1983;100:468-500 PMID: 6225933
  19. Restriction sites containing CpG show a higher frequency of polymorphism in human DNA.
    Cell. 1984 Jan;36(1):131-8 PMID: 6198090
  20. Plasmid-encoded hygromycin B resistance: the sequence of hygromycin B phosphotransferase gene and its expression in Escherichia coli and Saccharomyces cerevisiae.
    Gene. 1983 Nov;25(2-3):179-88 PMID: 6319235
  21. Intranuclear defect in beta-globin mRNA accumulation due to a premature translation termination codon.
    Blood. 1984 Jul;64(1):13-22 PMID: 6733265
  22. Beta O-39 thalassemia gene: a premature termination codon causes beta-mRNA deficiency without affecting cytoplasmic beta-mRNA stability.
    Blood. 1984 Jul;64(1):23-32 PMID: 6733274
  23. Translational attenuation: the regulation of bacterial resistance to the macrolide-lincosamide-streptogramin B antibiotics.
    CRC Crit Rev Biochem. 1984;16(2):103-32 PMID: 6203682
  24. Primary structure of human triosephosphate isomerase.
    J Biol Chem. 1984 Oct 10;259(19):11958-68 PMID: 6434534
  25. Initiation codon mutation as a cause of alpha thalassemia.
    J Biol Chem. 1984 Oct 25;259(20):12315-7 PMID: 6490612
  26. Nucleotide sequence of the triose phosphate isomerase gene of Escherichia coli.
    Mol Gen Genet. 1984;195(1-2):314-20 PMID: 6092857
  27. Human triosephosphate isomerase cDNA and protein structure. Studies of triosephosphate isomerase deficiency in man.
    J Biol Chem. 1985 Mar 25;260(6):3748-53 PMID: 2579079
  28. Chicken triosephosphate isomerase complements an Escherichia coli deficiency.
    Proc Natl Acad Sci U S A. 1985 Apr;82(7):2014-8 PMID: 3885220
  29. Consequences of frameshift mutations at the immunoglobulin heavy chain locus of the mouse.
    EMBO J. 1985 Feb;4(2):351-9 PMID: 3926482
  30. Activation of the major immediate early gene of human cytomegalovirus by cis-acting elements in the promoter-regulatory sequence and by virus-specific trans-acting components.
    J Virol. 1985 Aug;55(2):431-41 PMID: 2991567
  31. Characterization of the functional gene and several processed pseudogenes in the human triosephosphate isomerase gene family.
    Mol Cell Biol. 1985 Jul;5(7):1694-706 PMID: 4022011
  32. The triosephosphate isomerase gene from maize: introns antedate the plant-animal divergence.
    Cell. 1986 Jul 4;46(1):133-41 PMID: 3755078
  33. Nucleotide sequence of the triosephosphate isomerase gene from Aspergillus nidulans: implications for a differential loss of introns.
    Cell. 1986 Jul 4;46(1):143-7 PMID: 3521890
  34. Human triose-phosphate isomerase deficiency: a single amino acid substitution results in a thermolabile enzyme.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7903-7 PMID: 2876430
  35. Determinants of messenger RNA stability.
    Cell. 1987 Jan 16;48(1):5-6 PMID: 2431794
  36. Histone mRNA degradation in vivo: the first detectable step occurs at or near the 3' terminus.
    Mol Cell Biol. 1986 Dec;6(12):4362-71 PMID: 3467177
  37. Induced mRNA stability in Bacillus subtilis.
    Proc Natl Acad Sci U S A. 1987 Jan;84(2):498-502 PMID: 3099297
  38. Translation is required for regulation of histone mRNA degradation.
    Cell. 1987 Feb 27;48(4):615-26 PMID: 3028643
  39. Targeting of a chimeric human histone fusion mRNA to membrane-bound polysomes in HeLa cells.
    Proc Natl Acad Sci U S A. 1987 May;84(9):2683-7 PMID: 3472231
  40. Codon replacement in the PGK1 gene of Saccharomyces cerevisiae: experimental approach to study the role of biased codon usage in gene expression.
    Mol Cell Biol. 1987 Aug;7(8):2914-24 PMID: 2823108
  41. Unstable beta-globin mRNA in mRNA-deficient beta o thalassemia.
    Cell. 1981 Dec;27(3 Pt 2):543-53 PMID: 6101206
  42. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.
    Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408-12 PMID: 4504350
  43. Triose phosphate isomerase from the coelacanth. An approach to the rapid determination of an amino acid sequence with small amounts of material.
    Biochem J. 1974 Feb;137(2):185-97 PMID: 4824206
  44. Studies on the subunit structure and amino acid sequence of trisoe phosphate isomerase from chicken breast muscle.
    Biochem J. 1974 Apr;139(1):11-22 PMID: 4463937
  45. The amino acid sequence of rabbit muscle triose phosphate isomerase.
    Biochem J. 1975 Feb;145(2):335-44 PMID: 1171682
  46. Hemoglobin Cranston, an unstable variant having an elongated beta chain due to nonhomologous crossover between two normal beta chain genes.
    Proc Natl Acad Sci U S A. 1975 Sep;72(9):3609-13 PMID: 1059149
  47. Coupling of rates of transcription, translation, and messenger ribonucleic acid degradation in streptomycin-dependent mutants of Escherichia coli.
    J Bacteriol. 1976 Jan;125(1):84-93 PMID: 1107319
  48. Unstable-haemoglobin haemolytic anaemia.
    Acta Paediatr Scand. 1976 May;65(3):397-400 PMID: 1274572
  49. A precursor of globin messenger RNA.
    J Mol Biol. 1976 Sep 15;106(2):403-20 PMID: 978727
  50. An analysis of the three-dimensional structure of chicken triose phosphate isomerase.
    Biochem Soc Trans. 1977;5(3):642-7 PMID: 902882
  51. Translation and mRNA decay.
    Mol Gen Genet. 1978 Apr 6;160(2):121-9 PMID: 349350
  52. beta 0 thalassemia, a nonsense mutation in man.
    Proc Natl Acad Sci U S A. 1979 Jun;76(6):2886-9 PMID: 88735
  53. Regulation of ribosomal protein synthesis in Escherichia coli by selective mRNA inactivation.
    Proc Natl Acad Sci U S A. 1979 Jul;76(7):3411-5 PMID: 158759
  54. Interference of nonsense mutations with eukaryotic messenger RNA stability.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):5134-7 PMID: 388431
  55. Influence of mRNA secondary structure on binding and migration of 40S ribosomal subunits.
    Cell. 1980 Jan;19(1):79-90 PMID: 7357609
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1988-02-00
Pages
802-13
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC363207
Subset
IM
Grants
NIADDK NIH HHS · AM/GM 33938 · United States
NIDDK NIH HHS · DK 33938 · United States
NIADDK NIH HHS · R01 AM31747 · United States
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