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PMID: 28387841 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times.

Molecular biology and evolution ·Vol. 34 ·No. 7 ·2017-00-01 ·Pages 1812-1819

Kumar S, Stecher G, Suleski M, Hedges SB

Abstract

Evolutionary information on species divergence times is fundamental to studies of biodiversity, development, and disease. Molecular dating has enhanced our understanding of the temporal patterns of species divergences over the last five decades, and the number of studies is increasing quickly due to an exponential growth in the available collection of molecular sequences from diverse species and large number of genes. Our TimeTree resource is a public knowledge-base with the primary focus to make available all species divergence times derived using molecular sequence data to scientists, educators, and the general public in a consistent and accessible format. Here, we report a major expansion of the TimeTree resource, which more than triples the number of species (>97,000) and more than triples the number of studies assembled (>3,000). Furthermore, scientists can access not only the divergence time between two species or higher taxa, but also a timetree of a group of species and a timeline that traces a species' evolution through time. The new timetree and timeline visualizations are integrated with display of events on earth and environmental history over geological time, which will lead to broader and better understanding of the interplay of the change in the biosphere with the diversity of species on Earth. The next generation TimeTree resource is publicly available online at http://www.timetree.org.

Keywords
database divergence time software timetree
MeSH Terms
Biodiversity Biological Evolution Computational Biology/methods Databases, Genetic Evolution, Molecular Genetic Variation/genetics Phylogeny Sequence Analysis, DNA/methods Software Species Specificity
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Kumar Sudhir
Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA. | Department of Biology, Temple University, Philadelphia, PA. | Center for Biodiversity, Temple University, Philadelphia, PA.
Stecher Glen
Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA. | Department of Biology, Temple University, Philadelphia, PA.
Suleski Michael
Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA. | Center for Biodiversity, Temple University, Philadelphia, PA.
Hedges S Blair
Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA. | Department of Biology, Temple University, Philadelphia, PA. | Center for Biodiversity, Temple University, Philadelphia, PA.
Article Info
Journal
Molecular biology and evolution
Abbr.
Mol Biol Evol
ISSN
1537-1719
Published
2017-00-01
Pages
1812-1819
Language
English
Region
United States
NLM ID
8501455
Subset
IM
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