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PMID: 28805708 Published · epublish English Journal Article

Correlation of Leukocyte Telomere Length Measurement Methods in Patients with Dyskeratosis Congenita and in Their Unaffected Relatives.

International journal of molecular sciences ·Vol. 18 ·No. 8 ·2017-08-13

Khincha PP, Dagnall CL, Hicks B, Jones K, Aviv A, Kimura M, Katki H, Aubert G, Giri N, Alter BP, Savage SA, Gadalla SM

Abstract

Several methods have been employed to measure telomere length (TL) in human studies. It has been difficult to directly compare the results from these studies because of differences in the laboratory techniques and output parameters. We compared TL measurements (TLMs) by the three most commonly used methods, quantitative polymerase chain reaction (qPCR), flow cytometry with fluorescence in situ hybridization (flow FISH) and Southern blot, in a cohort of patients with the telomere biology disorder dyskeratosis congenita (DC) and in their unaffected relatives (controls). We observed a strong correlation between the Southern blot average TL and the flow FISH total lymphocyte TL in both the DC patients and their unaffected relatives (R² of 0.68 and 0.73, respectively). The correlation between the qPCR average TL and that of the Southern blot method was modest (R² of 0.54 in DC patients and of 0.43 in unaffected relatives). Similar results were noted when comparing the qPCR average TL and the flow FISH total lymphocyte TL (R² of 0.49 in DC patients and of 0.42 in unaffected relatives). In conclusion, the strengths of the correlations between the three widely used TL assays (qPCR, flow FISH, and Southern blot) were significantly different. Careful consideration is warranted when selecting the method of TL measurement for research and for clinical studies.

Keywords
Southern blot correlation dyskeratosis congenita flow FISH qPCR telomere length measurement
MeSH Terms
Adolescent Adult Aged Blotting, Southern Child Child, Preschool Dyskeratosis Congenita/genetics,pathology Female Flow Cytometry Humans In Situ Hybridization, Fluorescence Leukocytes/metabolism,pathology Male Middle Aged Pedigree Real-Time Polymerase Chain Reaction Telomere/genetics,pathology Telomere Homeostasis Telomere Shortening Young Adult
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Khincha Payal P
Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected].
Dagnall Casey L
Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected]. | Cancer Genomics Research Laboratory, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA. [email protected].
Hicks Belynda
Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected]. | Cancer Genomics Research Laboratory, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA. [email protected].
Jones Kristine
Cancer Genomics Research Laboratory, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected]. | Cancer Genomics Research Laboratory, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21701, USA. [email protected].
Aviv Abraham
Center of Human Development and Aging, Rutgers State University of New Jersey, Newark, NJ 07103, USA. [email protected].
Kimura Masayuki
Center of Human Development and Aging, Rutgers State University of New Jersey, Newark, NJ 07103, USA. [email protected].
Katki Hormuzd
Biostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected].
Aubert Geraldine
Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC V5Z 1L3, Canada. [email protected].
Giri Neelam
Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected].
Alter Blanche P
Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected].
Savage Sharon A
Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected].
Gadalla Shahinaz M
Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. [email protected].
Conflict of Interest

The authors declare no conflict of interest.

References (29)
29 references, click to expand
  1. Telomeres and aging.
    Physiol Rev. 2008 Apr;88(2):557-79 PMID: 18391173
  2. Malignancies and survival patterns in the National Cancer Institute inherited bone marrow failure syndromes cohort study.
    Br J Haematol. 2010 Jul;150(2):179-88 PMID: 20507306
  3. Reproducibility of telomere length assessment: Authors' Response to Damjan Krstajic and Ljubomir Buturovic.
    Int J Epidemiol. 2015 Oct;44(5):1739-41 PMID: 26403811
  4. Divergence of sperm and leukocyte age-dependent telomere dynamics: implications for male-driven evolution of telomere length in humans.
    Mol Hum Reprod. 2012 Nov;18(11):517-22 PMID: 22782639
  5. Comparison between southern blots and qPCR analysis of leukocyte telomere length in the health ABC study.
    J Gerontol A Biol Sci Med Sci. 2014 May;69(5):527-31 PMID: 23946336
  6. Updates on the biology and management of dyskeratosis congenita and related telomere biology disorders.
    Expert Rev Hematol. 2013 Jun;6(3):327-37 PMID: 23782086
  7. The limitations of qPCR telomere length measurement in diagnosing dyskeratosis congenita.
    Mol Genet Genomic Med. 2016 Mar 20;4(4):475-9 PMID: 27468421
  8. Very short telomere length by flow fluorescence in situ hybridization identifies patients with dyskeratosis congenita.
    Blood. 2007 Sep 1;110(5):1439-47 PMID: 17468339
  9. Associations between diet, lifestyle factors, and telomere length in women.
    Am J Clin Nutr. 2010 May;91(5):1273-80 PMID: 20219960
  10. Improving qPCR telomere length assays: Controlling for well position effects increases statistical power.
    Am J Hum Biol. 2015 Jul-Aug;27(4):570-5 PMID: 25757675
  11. Telomere length in epidemiology: a biomarker of aging, age-related disease, both, or neither?
    Epidemiol Rev. 2013;35:112-31 PMID: 23302541
  12. Impartial comparative analysis of measurement of leukocyte telomere length/DNA content by Southern blots and qPCR.
    Nucleic Acids Res. 2011 Nov 1;39(20):e134 PMID: 21824912
  13. Measurement of telomere length by the Southern blot analysis of terminal restriction fragment lengths.
    Nat Protoc. 2010 Sep;5(9):1596-607 PMID: 21085125
  14. Telomere Length and the Cancer-Atherosclerosis Trade-Off.
    PLoS Genet. 2016 Jul 07;12 (7):e1006144 PMID: 27386863
  15. Telomere length varies by DNA extraction method: implications for epidemiologic research.
    Cancer Epidemiol Biomarkers Prev. 2013 Nov;22(11):2047-54 PMID: 24019396
  16. Collapse of telomere homeostasis in hematopoietic cells caused by heterozygous mutations in telomerase genes.
    PLoS Genet. 2012;8(5):e1002696 PMID: 22661914
  17. Telomere length measurement by fluorescence in situ hybridization and flow cytometry: tips and pitfalls.
    Cytometry. 2002 Feb 1;47(2):89-99 PMID: 11813198
  18. Direct comparison of flow-FISH and qPCR as diagnostic tests for telomere length measurement in humans.
    PLoS One. 2014 Nov 19;9(11):e113747 PMID: 25409313
  19. Telomere length measurement-caveats and a critical assessment of the available technologies and tools.
    Mutat Res. 2012 Feb 1;730(1-2):59-67 PMID: 21663926
  20. Telomere length is associated with disease severity and declines with age in dyskeratosis congenita.
    Haematologica. 2012 Mar;97(3):353-9 PMID: 22058220
  21. Dyskeratosis congenita.
    Hematology Am Soc Hematol Educ Program. 2011;2011:480-6 PMID: 22160078
  22. Commentary: The reliability of telomere length measurements.
    Int J Epidemiol. 2015 Oct;44(5):1683-6 PMID: 26403812
  23. Structure and variability of human chromosome ends.
    Mol Cell Biol. 1990 Feb;10(2):518-27 PMID: 2300052
  24. Flow cytometry and FISH to measure the average length of telomeres (flow FISH).
    Nat Protoc. 2006;1(5):2365-76 PMID: 17406480
  25. Influence of DNA extraction methods on relative telomere length measurements and its impact on epidemiological studies.
    Sci Rep. 2016 May 03;6:25398 PMID: 27138987
  26. Telomere length in blood, buccal cells, and fibroblasts from patients with inherited bone marrow failure syndromes.
    Aging (Albany NY). 2010 Nov;2(11):867-74 PMID: 21113082
  27. Effect of Recipient Age and Stem Cell Source on the Association between Donor Telomere Length and Survival after Allogeneic Unrelated Hematopoietic Cell Transplantation for Severe Aplastic Anemia.
    Biol Blood Marrow Transplant. 2016 Dec;22(12 ):2276-2282 PMID: 27641680
  28. Mutations in dyskeratosis congenita: their impact on telomere length and the diversity of clinical presentation.
    Blood. 2006 Apr 1;107(7):2680-5 PMID: 16332973
  29. Telomere measurement by quantitative PCR.
    Nucleic Acids Res. 2002 May 15;30(10):e47 PMID: 12000852
Article Info
Journal
International journal of molecular sciences
Abbr.
Int J Mol Sci
ISSN
1422-0067
Published
2017-08-13
Epub
2017-00-13
Language
English
Region
Switzerland
NLM ID
101092791
PMCID
PMC5578154
Subset
IM
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