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PMID: 3054808 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A specific and efficient photoreaction between E. coli RNA polymerase and T+1 in the lacUV5 or deoP1 promoter.

Nucleic acids research ·Vol. 16 ·No. 20 ·1988-10-25 ·Pages 9545-55

Jeppesen C, Jensen KF, Nielsen PE

Abstract

Upon irradiation of the RNA polymerase-lacUV5 or deoP1 promoter complex with short wavelength ultraviolet light (lambda less than or equal to 300 nm) the polymerase is covalently crosslinked at an efficiency of greater than 10% to the first transcribed base of the template DNA strand when this is a thymine. The temperature dependence of this RNA polymerase-T+1 photoreaction strongly indicates a relation to the formation of the open complex. It is suggested that open complex formation is preceded or accompanied by a specific contact between the RNA polymerase and the first transcribed base of the DNA template.

MeSH Terms
Cross-Linking Reagents DNA/radiation effects DNA-Directed RNA Polymerases/genetics,radiation effects Escherichia coli/enzymology,genetics,radiation effects Lac Operon/radiation effects Photochemistry Promoter Regions, Genetic/radiation effects Templates, Genetic Thymine/radiation effects Transcription, Genetic/radiation effects Ultraviolet Rays
Chemicals
Cross-Linking Reagents DNA DNA-Directed RNA Polymerases Thymine
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Jeppesen C
Department of Biochemistry B, University of Copenhagen, Denmark.
Jensen K F
Nielsen P E
References (20)
20 references, click to expand
  1. Changes in the DNA structure of the lac UV5 promoter during formation of an open complex with Escherichia coli RNA polymerase.
    Biochemistry. 1985 May 21;24(11):2723-31 PMID: 3896305
  2. Topography of interaction of Escherichia coli RNA polymerase subunits with lac UV5 promoter.
    FEBS Lett. 1981 Jun 1;128(1):46-50 PMID: 7023981
  3. Reconstitution of bacterial DNA-dependent RNA-polymerase from isolated subunits as a tool for the elucidation of the role of the subunits in transcription.
    FEBS Lett. 1970 Dec;11(3):165-168 PMID: 11945477
  4. Direct coordination of nucleotide with the intrinsic metal in Escherichia coli RNA polymerase. A nuclear magnetic resonance study with cobalt-substituted enzyme.
    Biochemistry. 1982 Sep 14;21(19):4657-64 PMID: 6753923
  5. Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):122-6 PMID: 6987648
  6. In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster.
    Mol Cell Biol. 1985 Aug;5(8):2009-18 PMID: 3018544
  7. Fluorescent affinity labeling of initiation site on ribonucleic acid polymerase of Escherichia coli.
    Biochemistry. 1974 Jun 4;13(12):2562-6 PMID: 4364835
  8. E. coli RNA polymerase interacts homologously with two different promoters.
    Cell. 1980 Jun;20(2):269-81 PMID: 6248238
  9. Use of light for footprinting DNA in vivo.
    Nature. 1984 Jun 21-27;309(5970):682-7 PMID: 6728031
  10. A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography.
    Biochemistry. 1975 Oct 21;14(21):4634-8 PMID: 1101952
  11. Promoter search by Escherichia coli RNA polymerase on a circular DNA template.
    J Biol Chem. 1987 Oct 15;262(29):14178-89 PMID: 3308887
  12. Mapping of single-stranded regions in duplex DNA at the sequence level: single-strand-specific cytosine methylation in RNA polymerase-promoter complexes.
    Proc Natl Acad Sci U S A. 1983 May;80(9):2544-8 PMID: 6573669
  13. Laser crosslinking of E. coli RNA polymerase and T7 DNA.
    Nucleic Acids Res. 1982 Apr 10;10(7):2399-414 PMID: 7045809
  14. Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena.
    Cell. 1982 Nov;31(1):147-57 PMID: 6297745
  15. Photofootprinting in vivo detects transcription-dependent changes in yeast TATA boxes.
    Nature. 1987 Jan 8-14;325(7000):173-7 PMID: 3543694
  16. The study of histone--histone associations by chemical cross-linking.
    Methods Cell Biol. 1978;18:429-40 PMID: 355797
  17. The structure of tandem regulatory regions in the deo operon of Escherichia coli K12.
    EMBO J. 1982;1(3):317-22 PMID: 16453417
  18. Adenosine-guanosine preferential photocleavage of DNA by azido-benzoyl- and diazocyclopenta-dienylcarbonyloxy derivatives of 9-aminoacridine.
    Nucleic Acids Res. 1988 May 11;16(9):3877-88 PMID: 2836803
  19. Photocleavage of DNA and photofootprinting of E. coli RNA polymerase bound to promoter DNA by azido-9-acridinylamines.
    Nucleic Acids Res. 1988 Jul 11;16(13):5755-70 PMID: 3041368
  20. The molecular topography of RNA polymerase-promoter interaction.
    Cell. 1979 Oct;18(2):277-85 PMID: 387258
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1988-10-25
Pages
9545-55
Language
English
Region
England
NLM ID
0411011
PMCID
PMC338762
Subset
IM
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