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PMID: 30630333 Published · ppublish jpn

[A trial of simple and rapid carbapenemase big five gene analysis using LAMP method].

Rinsho Biseibutsu Jinsoku Shindan Kenkyukai shi = JARMAM : Journal of the Association for Rapid Method and Automation in Microbiology ·Vol. 28 ·No. 2 ·2018-12-25

Funashima Y, Sugahara K, Hirata Y, Kato K, Sato K, Sasaki Y, Nagasawa Z, Umemura T

Abstract

Reliable detection and typing of carbapenemase is important in the treatment of infectious diseases. In this study we newly designed LAMP primer based on the latest information, and established a detection method for Carbapenemase Big five gene. For DNA extraction from strains, alkaline boiling method and commercial kit were used. The reaction temperatures of the LAMP method was VIM: 65°C, NDM: 63°C, KPC: 65°C, OXA-48-like: 65°C, IMP: 61°C. And simultaneous LAMP method was at 63°C, for 60 min. It was possible to detect up to 103 copies/ml. The reactivity of LAMP using 36 strains verified by Multiplex-PCR was VIM (4/4: number of LAMP method positive strains/number of strains evaluated), NDM (2/2), KPC (4/4), OXA-48-like (4/4), IMP (17/17). The type of carbapenemase determined by the LAMP method were all consistent with multiplex PCR. All strains were detected within 30 min. In VIM, both VIM-1-like and VIM-2-like were able to detect. In this study, although the number and variation of the strains evaluated was limited, LAMP method was clinically useful as a simple and rapid carbapenemase detection method.

MeSH 主题词
Bacterial Proteins/analysis,genetics Multiplex Polymerase Chain Reaction Sensitivity and Specificity beta-Lactamases/genetics
Article Info
Journal
Rinsho Biseibutsu Jinsoku Shindan Kenkyukai shi = JARMAM : Journal of the Association for Rapid Method and Automation in Microbiology
Abbr.
Rinsho Biseibutshu Jinsoku Shindan Kenkyukai Shi
ISSN
0915-1753
Published
2018-12-25
Language
jpn
Country/Region
Japan
NLM ID
9419185
External Links
PubMed source
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