Home LiteratureArticle Details
PMID: 31147835 Published · ppublish English

Description of Halegenticoccus soli gen. nov., sp. nov., a halophilic archaeon isolated from a soil sample of Ebi lake.

Extremophiles : life under extreme conditions ·Vol. 23 ·No. 5 ·2019-09-00

Liu BB, Narsing Rao MP, Yin XQ, Li X, Salam N, Zhang Y, Alkhalifah DHM, Hozzein WN, Li WJ

Abstract

Two extreme halophilic archaeal strains, SYSUA9-0T and SYSUA9-1, were isolated from Ebi lake of Xinjiang, China. The colonies were Gram-negative, coccoid, and non-motile. Strains were aerobic and grew at 25-50 °C (optimum at 37 °C), in the presence of 10-35% (w/v) NaCl (optimum at 20-22%), and pH 6.0-8.0 (optimum at 7.0). The 16S rRNA gene sequence result revealed that the two strains were closely related to Haloprofundus marisrubri SB9T (92.7% similarity). The DNA-DNA hybridization value (97% ± 1%) suggested that SYSUA9-0T and SYSUA9-1 were similar; however, their sequence similarities with other archaeal members suggested that they were novel candidates. The genomic G + C content of SYSUA9-0T was 66.9%. The average nucleotide identity value between SYSU A9-0T and Haloprofundus marisrubri SB9T was 69.1%, which was far below the cutoff value (95-96%) proposed to define the species boundary. The polar lipids were phosphatidylglycerol (PG), phosphatidylglycerolphosphate methylester (PGP-Me), sulfated mannosyl glucosyl diether, mannosyl glucosyldiether, and four unidentified glycolipids. Phenotypic, chemotaxonomic and comparative genome analysis suggested that SYSU A9-0T and SYSU A9-1 represent a novel species of a new genus within the family Haloferacaceae, for which the name Halegenticoccus soli gen. nov., sp. nov., is proposed. The type strain is SYAUA9-0T (= KCTC4241T = CGMCC 1.15765T).

Keywords
Archaea Ebi lake Halegenticoccus soli Haloferacaceae Halophile
MeSH 主题词
Archaea/classification,genetics,metabolism Base Composition Genome, Archaeal Glycolipids/metabolism Lakes/microbiology Phylogeny RNA, Ribosomal, 16S/genetics Salt Tolerance Soil Microbiology
Article Info
Journal
Extremophiles : life under extreme conditions
Abbr.
Extremophiles
ISSN
1433-4909
Corresponding email
Published
2019-09-00
Language
English
Country/Region
Germany
NLM ID
9706854
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]