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PMID: 3145815 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The 5'-upstream region of the yeast 25S rRNA gene contains a promoter element allowing expression in yeast and E. coli.

Current genetics ·Vol. 14 ·No. 4 ·1988-10-00 ·Pages 293-302

Strobel G, Magdolen V, Oechsner U, Huh HS, Bandlow W

Abstract

The 25S rRNA gene of Saccharomyces cerevisiae is preceded by a bona fide TATA sequence which allows the initiation of transcription--presumably by polymerase II--from the same strand as the 25S rRNA gene. When the promoter fragment is cloned in front of a lacZ gene equipped with an initiation codon but lacking a promoter, this element permits formation of beta-galactosidase both in yeast and E. coli. Using RNA from yeast transformed with the fusion plasmid, we mapped by primer elongation a single initiation site 63 bp downstream from the presumed TATA sequence, i.e. about 53 bp 5' of the 25S rRNA gene. A similar signal at about the same position was observed when RNA from untransformed wild-type yeast was used as a template for primer elongation. These results suggest that transcription from this polymerase II promoter-like element occurs in vivo. A regulatory function could not be assigned to this transcript. Its initiation is not significantly influenced by heme or carbon source, although two boxes of high homology with upstream activation sequences (UAS) mediating heme dependent expression of the iso-1-cytochrome c gene (CYC1) precede the promoter at the appropriate distance.

MeSH Terms
Amino Acid Sequence Base Sequence Blotting, Southern Cloning, Molecular DNA, Fungal DNA, Ribosomal Escherichia coli/genetics Genetic Vectors Heme/physiology Molecular Sequence Data Oligonucleotide Probes Promoter Regions, Genetic RNA, Fungal/genetics RNA, Ribosomal/genetics Regulatory Sequences, Nucleic Acid Restriction Mapping Saccharomyces cerevisiae/genetics Transformation, Genetic beta-Galactosidase/biosynthesis
Chemicals
DNA, Fungal DNA, Ribosomal Oligonucleotide Probes RNA, Fungal RNA, Ribosomal Heme beta-Galactosidase
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Strobel G
Institut für Genetik und Mikrobiologie, Universität München, Federal Republic of Germany.
Magdolen V
Oechsner U
Huh H S
Bandlow W
References (43)
43 references, click to expand
  1. Yeast HIS3 expression in Escherichia coli depends upon fortuitous homology between eukaryotic and prokaryotic promoter elements.
    J Mol Biol. 1986 Sep 20;191(2):221-9 PMID: 3543377
  2. Isolation of genes by complementation in yeast: molecular cloning of a cell-cycle gene.
    Proc Natl Acad Sci U S A. 1980 Apr;77(4):2119-23 PMID: 6246523
  3. Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.
    DNA. 1985 Apr;4(2):165-70 PMID: 3996185
  4. The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript.
    Nucleic Acids Res. 1981 Oct 10;9(19):4847-62 PMID: 7312619
  5. Beta-galactosidase gene fusions for analyzing gene expression in escherichia coli and yeast.
    Methods Enzymol. 1983;100:293-308 PMID: 6312261
  6. Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiae.
    Mol Cell Biol. 1981 Nov;1(11):1007-15 PMID: 7050661
  7. Isolation and sequence of the gene for actin in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3912-6 PMID: 7001447
  8. Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast.
    J Bacteriol. 1975 Jun;122(3):855-65 PMID: 1097403
  9. Promoters, activator proteins, and the mechanism of transcriptional initiation in yeast.
    Cell. 1987 May 8;49(3):295-7 PMID: 2882858
  10. Functional genetic expression of eukaryotic DNA in Escherichia coli.
    Proc Natl Acad Sci U S A. 1976 May;73(5):1471-5 PMID: 775490
  11. Macromolecular synthesis in Saccharomyces cerevisiae in different growth media.
    J Bacteriol. 1969 May;98(2):458-66 PMID: 5784205
  12. Nucleotide sequence analysis of the nuclear gene coding for manganese superoxide dismutase of yeast mitochondria, a gene previously assumed to code for the Rieske iron-sulphur protein.
    Eur J Biochem. 1985 Feb 15;147(1):153-61 PMID: 3882422
  13. The major promoter element of rRNA transcription in yeast lies 2 kb upstream.
    Cell. 1984 Dec;39(3 Pt 2):663-73 PMID: 6096018
  14. Conservation of high efficiency promoter sequences in Saccharomyces cerevisiae.
    Nucleic Acids Res. 1982 Apr 24;10(8):2625-37 PMID: 6281737
  15. The redundancy of ribosomal and transfer RNA genes in Saccharomyces cerevisiae.
    J Mol Biol. 1969 Mar 14;40(2):261-77 PMID: 5365012
  16. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  17. Identification and sequence of the gene encoding cytochrome c heme lyase in the yeast Saccharomyces cerevisiae.
    EMBO J. 1987 Jan;6(1):235-41 PMID: 3034577
  18. Nucleotide sequence of the operator-promoter region of the galactose operon of Escherichia coli.
    Proc Natl Acad Sci U S A. 1977 Jan;74(1):106-10 PMID: 319453
  19. Regulatory proteins in yeast.
    Annu Rev Genet. 1987;21:425-52 PMID: 3327472
  20. Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae.
    Cell. 1984 Feb;36(2):503-11 PMID: 6319028
  21. Fusion of Escherichia coli lacZ to the cytochrome c gene of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1981 Apr;78(4):2199-203 PMID: 6264467
  22. Isolation and characterization of nuclear genes coding for subunits of the yeast ubiquinol-cytochrome c reductase complex.
    Gene. 1982 Dec;20(3):323-37 PMID: 6299897
  23. Compilation and analysis of Escherichia coli promoter DNA sequences.
    Nucleic Acids Res. 1983 Apr 25;11(8):2237-55 PMID: 6344016
  24. Posttranscriptional heme control of catalase synthesis in the yeast Saccharomyces cerevisiae.
    Curr Genet. 1981 Sep;4(1):19-23 PMID: 24185863
  25. Conserved sequences upstream of yeast ribosomal protein genes.
    Curr Genet. 1985;9(4):273-7 PMID: 3916723
  26. cAMP-dependent protein kinase activity in yeast mitochondria.
    Z Naturforsch C. 1987 Nov-Dec;42(11-12):1291-302 PMID: 2834886
  27. Hybridization of denatured RNA transferred or dotted nitrocellulose paper.
    Methods Enzymol. 1983;100:255-66 PMID: 6194404
  28. Role for the J-F intercistronic region of bacteriophages phi X174 and G4 in stability of mRNA.
    J Virol. 1983 Oct;48(1):186-96 PMID: 6224941
  29. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  30. A path from mitochondria to the yeast nucleus.
    Philos Trans R Soc Lond B Biol Sci. 1988 May 31;319(1193):127-33 PMID: 2901762
  31. Evidence for transcriptional regulation of orotidine-5'-phosphate decarboxylase in yeast by hybridization of mRNA to the yeast structural gene cloned in Escherichia coli.
    Proc Natl Acad Sci U S A. 1979 Jan;76(1):386-90 PMID: 370827
  32. Functional expression of cloned yeast DNA in Escherichia coli.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):487-91 PMID: 322128
  33. A simple method for the large-scale preparation of mitochondria from microorganisms.
    Anal Biochem. 1977 Jan;77(1):110-21 PMID: 137681
  34. Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site.
    Cell. 1983 Apr;32(4):1279-86 PMID: 6301690
  35. Heme control region of the catalase T gene of the yeast Saccharomyces cerevisiae.
    Mol Gen Genet. 1986 Apr;203(1):73-8 PMID: 2423850
  36. Kinetics of the intracellular availability of heme after supplementing a heme-deficient yeast mutant with 5-aminolevulinate.
    Biol Chem Hoppe Seyler. 1986 May;367(5):379-85 PMID: 3017377
  37. Mapping of in vivo messenger RNAs for bacteriophage phiX-174.
    Proc Natl Acad Sci U S A. 1976 Oct;73(10):3519-23 PMID: 1068463
  38. The structure of the yeast ribosomal RNA genes. 3. Precise mapping of the 18 S and 25 S rRNA genes and structure of the adjacent regions.
    Nucleic Acids Res. 1981 Feb 25;9(4):789-99 PMID: 7015285
  39. Production of a functional eukaryotic enzyme in Escherichia coli: cloning and expression of the yeast structural gene for imidazole-glycerolphosphate dehydratase (his3).
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5255-9 PMID: 341150
  40. Structure, expression and regulation of a nuclear gene encoding a mitochondrial protein: the yeast L(+)-lactate cytochrome c oxidoreductase (cytochrome b2).
    EMBO J. 1985 Dec 1;4(12):3265-72 PMID: 3004948
  41. Identification and isolation of the yeast cytochrome c gene.
    Cell. 1978 Jul;14(3):673-80 PMID: 210956
  42. The mitochondrial genotype can influence nuclear gene expression in yeast.
    Science. 1987 Jan 30;235(4788):576-80 PMID: 3027892
  43. A comparison of yeast ribosomal protein gene DNA sequences.
    Nucleic Acids Res. 1984 Nov 26;12(22):8295-312 PMID: 6390341
Article Info
Journal
Current genetics
Abbr.
Curr Genet
ISSN
0172-8083
Published
1988-10-00
Pages
293-302
Language
English
Region
United States
NLM ID
8004904
Subset
IM
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