Home LiteratureArticle Details
PMID: 3194194 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The first BCR gene intron contains breakpoints in Philadelphia chromosome positive leukemia.

Nucleic acids research ·Vol. 16 ·No. 21 ·1988-11-11 ·Pages 10069-81

Heisterkamp N, Knoppel E, Groffen J

Abstract

The hallmark of chronic myelogenous leukemia (CML) is a translocation between chromosomes 9 and 22 - the Philadelphia (Ph') translocation. The translocation is also found in acute lymphocytic leukemia (ALL) albeit in a lower percentage of patients. The breakpoint on chromosome 22 is located within the BCR gene: in CML, breakpoints are clustered within 5.8 kb of DNA, the major breakpoint cluster region (Mbcr). In ALL, breakpoints have been reported within the Mbcr but also in more 5' regions encompassing the BCR gene. To characterize the latter breakpoints, we have molecularly cloned and mapped the entire gene, which encompasses approximately 130 kb of DNA. Mbcr negative, Ph'-positive ALL breakpoints were not distributed at random within the gene but rather were found exclusively within the 3' half of the first BCR gene intron. In contrast to the Mbcr, which is limited to a region of 5.8 kb, this part of the intron has a size of 35 kb. Translocation breakpoints in this region appear to be specific for ALL, since it was not rearranged in clinically well-defined CML specimens nor in any other tumor DNA samples examined.

MeSH Terms
Base Sequence Chromosome Inversion Chromosomes, Human, Pair 22 Chromosomes, Human, Pair 9 Cosmids Humans Introns Leukemia, Myelogenous, Chronic, BCR-ABL Positive/genetics Molecular Sequence Data Oncogenes Philadelphia Chromosome Restriction Mapping Translocation, Genetic
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Heisterkamp N
Section of Molecular Genetics, Childrens Hospital of Los Angeles, CA 90027.
Knoppel E
Groffen J
References (47)
47 references, click to expand
  1. Letter: A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining.
    Nature. 1973 Jun 1;243(5405):290-3 PMID: 4126434
  2. Long-range mapping of the Philadelphia chromosome by pulsed-field gel electrophoresis.
    Blood. 1988 Mar;71(3):697-702 PMID: 3422829
  3. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  4. The Ph1 chromosome in childhood leukaemia.
    Br J Haematol. 1979 Jan;41(1):25-41 PMID: 283834
  5. Philadelphia chromosome positive childhood acute lymphoblastic leukemia.
    Blood. 1980 Jul;56(1):15-22 PMID: 6930307
  6. Supercoiled loops and eucaryotic DNA replicaton.
    Cell. 1980 Nov;22(1 Pt 1):79-85 PMID: 7428042
  7. Organ site specificity for cancer in chromosomal instability disorders.
    Cancer Res. 1982 Aug;42(8):3252-4 PMID: 7093964
  8. A cellular oncogene is translocated to the Philadelphia chromosome in chronic myelocytic leukaemia.
    Nature. 1982 Dec 23;300(5894):765-7 PMID: 6960256
  9. The human v-abl cellular homologue.
    J Mol Appl Genet. 1983;2(1):57-68 PMID: 6302194
  10. Rearrangement and amplification of c-abl sequences in the human chronic myelogenous leukemia cell line K-562.
    Proc Natl Acad Sci U S A. 1983 Aug;80(15):4813-7 PMID: 6308652
  11. Localization of the c-ab1 oncogene adjacent to a translocation break point in chronic myelocytic leukaemia.
    Nature. 1983 Nov 17-23;306(5940):239-42 PMID: 6316147
  12. Amplified C lambda and c-abl genes are on the same marker chromosome in K562 leukemia cells.
    Proc Natl Acad Sci U S A. 1983 Dec;80(23):7289-92 PMID: 6580644
  13. Unexpected relationships between four large deletions in the human beta-globin gene cluster.
    Cell. 1983 Dec;35(3 Pt 2):701-9 PMID: 6652684
  14. Philadelphia chromosomal breakpoints are clustered within a limited region, bcr, on chromosome 22.
    Cell. 1984 Jan;36(1):93-9 PMID: 6319012
  15. "A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity". Addendum.
    Anal Biochem. 1984 Feb;137(1):266-7 PMID: 6329026
  16. An alteration of the human c-abl protein in K562 leukemia cells unmasks associated tyrosine kinase activity.
    Cell. 1984 Jul;37(3):1035-42 PMID: 6204766
  17. Separation of chromosomal DNA molecules from yeast by orthogonal-field-alternation gel electrophoresis.
    Nucleic Acids Res. 1984 Jul 25;12(14):5647-64 PMID: 6379602
  18. The human cellular abl gene product in the chronic myelogenous leukemia cell line K562 has an associated tyrosine protein kinase activity.
    Virology. 1985 Jan 30;140(2):230-8 PMID: 2982232
  19. Activation of the c-abl oncogene by viral transduction or chromosomal translocation generates altered c-abl proteins with similar in vitro kinase properties.
    Mol Cell Biol. 1985 Jan;5(1):204-13 PMID: 4039028
  20. Chronic myelogenous leukemia: recent advances.
    Blood. 1985 May;65(5):1039-47 PMID: 2581632
  21. Distinguishing the Philadelphia chromosome of acute lymphoblastic leukemia from its counterpart in chronic myelogenous leukemia.
    N Engl J Med. 1985 Jul 4;313(1):51-2 PMID: 3858671
  22. Fused transcript of abl and bcr genes in chronic myelogenous leukaemia.
    Nature. 1985 Jun 13-19;315(6020):550-4 PMID: 2989692
  23. Soviet alcoholism. Drunk driver stripped of degree.
    Nature. 1985 Aug 29-Sep 4;316(6031):758-9 PMID: 4033775
  24. The breakpoint in 22q11 in a case of Ph-positive acute lymphocytic leukemia interrupts the immunoglobulin light chain gene cluster.
    Cancer Genet Cytogenet. 1985 Oct;18(2):173-7 PMID: 3931902
  25. Evidence of a new chimeric bcr/c-abl mRNA in patients with chronic myelocytic leukemia and the Philadelphia chromosome.
    N Engl J Med. 1985 Dec 5;313(23):1429-33 PMID: 3864009
  26. Translocation breakpoint mapping: molecular and cytogenetic studies of chromosome 22.
    Cancer Genet Cytogenet. 1986 Jan 1;19(1-2):81-92 PMID: 3455663
  27. Heterogeneity of chromosome 22 breakpoint in Philadelphia-positive (Ph+) acute lymphocytic leukemia.
    Proc Natl Acad Sci U S A. 1986 Mar;83(6):1807-11 PMID: 3513189
  28. The chronic myelogenous leukemia-specific P210 protein is the product of the bcr/abl hybrid gene.
    Science. 1986 Jul 11;233(4760):212-4 PMID: 3460176
  29. Pulsed field gradient electrophoresis of DNA digested in agarose allows the sizing of the large duplication unit of a surface antigen gene in trypanosomes.
    Gene. 1986;42(3):313-22 PMID: 3015741
  30. Gamma delta beta-thalassaemias 1 and 2 are the result of a 100 kbp deletion in the human beta-globin cluster.
    Nucleic Acids Res. 1986 Sep 11;14(17):7017-29 PMID: 3763397
  31. bcr rearrangement and translocation of the c-abl oncogene in Philadelphia positive acute lymphoblastic leukemia.
    Blood. 1986 Dec;68(6):1369-75 PMID: 3465378
  32. The chronic myelocytic cell line K562 contains a breakpoint in bcr and produces a chimeric bcr/c-abl transcript.
    Mol Cell Biol. 1986 Feb;6(2):607-16 PMID: 3023859
  33. Overlapping cDNA clones define the complete coding region for the P210c-abl gene product associated with chronic myelogenous leukemia cells containing the Philadelphia chromosome.
    Proc Natl Acad Sci U S A. 1986 Dec;83(24):9768-72 PMID: 3540951
  34. Unique forms of the abl tyrosine kinase distinguish Ph1-positive CML from Ph1-positive ALL.
    Science. 1987 Jan 2;235(4784):85-8 PMID: 3541203
  35. A novel c-abl protein product in Philadelphia-positive acute lymphoblastic leukaemia.
    Nature. 1987 Feb 12-18;325(6105):631-5 PMID: 3543692
  36. A novel abl protein expressed in Philadelphia chromosome positive acute lymphoblastic leukaemia.
    Nature. 1987 Feb 12-18;325(6105):635-7 PMID: 3027581
  37. PFGE of human DNA: 5-azacytidine improves restriction.
    Nucleic Acids Res. 1987 Apr 10;15(7):3183 PMID: 2436149
  38. cDNA sequence for human bcr, the gene that translocates to the abl oncogene in chronic myeloid leukaemia.
    EMBO J. 1987 Jan;6(1):115-9 PMID: 3107980
  39. Evidence that the phl gene encodes a 160,000-dalton phosphoprotein with associated kinase activity.
    Mol Cell Biol. 1987 May;7(5):1955-60 PMID: 3299055
  40. The CML-specific P210 bcr/abl protein, unlike v-abl, does not transform NIH/3T3 fibroblasts.
    Science. 1987 Jul 31;237(4814):532-5 PMID: 2440107
  41. In vitro transformation of immature hematopoietic cells by the P210 BCR/ABL oncogene product of the Philadelphia chromosome.
    Proc Natl Acad Sci U S A. 1987 Sep;84(18):6558-62 PMID: 3498165
  42. Unique fusion of bcr and c-abl genes in Philadelphia chromosome positive acute lymphoblastic leukemia.
    Cell. 1987 Oct 9;51(1):33-40 PMID: 2820585
  43. The first intron in the human c-abl gene is at least 200 kilobases long and is a target for translocations in chronic myelogenous leukemia.
    Mol Cell Biol. 1987 Sep;7(9):3231-6 PMID: 3313010
  44. Novel chimaeric protein expressed in Philadelphia positive acute lymphoblastic leukaemia.
    Nature. 1987 Oct 29-Nov 4;329(6142):851-3 PMID: 3478595
  45. A new fused transcript in Philadelphia chromosome positive acute lymphocytic leukaemia.
    Nature. 1987 Nov 26-Dec 2;330(6146):386-8 PMID: 2825022
  46. Deletion mapping of a locus on human chromosome 22 involved in the oncogenesis of meningioma.
    Proc Natl Acad Sci U S A. 1987 Dec;84(24):9275-9 PMID: 2892198
  47. Human chronic myelogenous leukemia cell-line with positive Philadelphia chromosome.
    Blood. 1975 Mar;45(3):321-34 PMID: 163658
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1988-11-11
Pages
10069-81
Language
English
Region
England
NLM ID
0411011
PMCID
PMC338837
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]