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PMID: 3316182 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Rhizobium meliloti nifN (fixF) gene is part of an operon regulated by a nifA-dependent promoter and codes for a polypeptide homologous to the nifK gene product.

Journal of bacteriology ·Vol. 169 ·No. 12 ·1987-12-00 ·Pages 5393-400

Aguilar OM, Reiländer H, Arnold W, Pühler A

Abstract

An essential gene for symbiotic nitrogen fixation (fixF) is located near the common nodulation region of Rhizobium meliloti. A DNA fragment carrying fixF was characterized by hybridization with Klebsiella pneumoniae nif DNA and by nucleotide sequence analysis. The fixF gene was found to be related to K. pneumoniae nifN and was therefore renamed as the R. meliloti nifN gene. Upstream of the nifN coding region a second open reading frame was identified coding for a putative polypeptide of 110 amino acids (ORF110). By fragment-specific Tn5 mutagenesis it was shown that the nifN gene and ORF110 form an operon. The control region of this operon contains a nif promoter and also the putative nifA-binding sequence. For the deduced amino acid sequence of the nifN gene product a striking homology to the R. meliloti nifK protein was found. One cysteine residue and its adjacent amino acid sequence, which are highly conserved in the R. meliloti nifK, R. meliloti nifN, and K. pneumoniae nifN proteins, may play a role in binding the FeMo cofactor.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/genetics Base Sequence Cloning, Molecular DNA, Bacterial/genetics Gene Expression Regulation Genes, Bacterial Klebsiella pneumoniae/genetics Molecular Sequence Data Nitrogen Fixation/genetics Nucleic Acid Hybridization Operon Peptides/genetics Plasmids Promoter Regions, Genetic Rhizobium/genetics Sequence Homology, Nucleic Acid
Chemicals
Bacterial Proteins DNA, Bacterial Peptides
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Aguilar O M
Lehrstuhl für Genetik, Fakultät für Biologie, Universität Bielefeld, Federal Republic of Germany.
Reiländer H
Arnold W
Pühler A
References (29)
29 references, click to expand
  1. Random subcloning of sonicated DNA: application to shotgun DNA sequence analysis.
    Anal Biochem. 1983 Feb 15;129(1):216-23 PMID: 6305233
  2. Improved plasmid vectors for the isolation of translational lac gene fusions.
    Gene. 1984 Nov;31(1-3):269-73 PMID: 6098531
  3. Genes controlling early and late functions in symbiosis are located on a megaplasmid in Rhizobium meliloti.
    Mol Gen Genet. 1981;184(2):326-33 PMID: 6949001
  4. Fine-structure mapping and complementation analysis of nif (nitrogen fixation) genes in Klebsiella pneumoniae.
    J Bacteriol. 1978 Oct;136(1):253-66 PMID: 361693
  5. Characterization of a Rhizobium meliloti fixation gene (fixF) located near the common nodulation region.
    J Bacteriol. 1985 Oct;164(1):245-54 PMID: 3900039
  6. Biosynthesis of iron-molybdenum cofactor in the absence of nitrogenase.
    J Bacteriol. 1984 Sep;159(3):888-93 PMID: 6384184
  7. Azotobacter vinelandii nifD- and nifE-encoded polypeptides share structural homology.
    Proc Natl Acad Sci U S A. 1985 Sep;82(17):5720-3 PMID: 16593596
  8. A molecular genetic study of nif expression in Klebsiella pneumoniae at the level of transcription, translation and nitrogenase activity.
    Mol Gen Genet. 1985;198(2):198-206 PMID: 3884971
  9. Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti.
    Mol Gen Genet. 1981;184(2):318-25 PMID: 6949000
  10. Products of the iron-molybdenum cofactor-specific biosynthetic genes, nifE and nifN, are structurally homologous to the products of the nitrogenase molybdenum-iron protein genes, nifD and nifK.
    J Bacteriol. 1987 Apr;169(4):1547-53 PMID: 3470285
  11. Mapping and expression of a regulatory nitrogen fixation gene (fixD) of Rhizobium meliloti.
    EMBO J. 1985 Nov;4(11):2751-6 PMID: 16453640
  12. New M13 vectors for cloning.
    Methods Enzymol. 1983;101:20-78 PMID: 6310323
  13. The genetic complexity of nitrogen fixation. The ninth Fleming lecture.
    J Gen Microbiol. 1984 Nov;130(11):2745-55 PMID: 6396374
  14. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  15. Nucleotide sequence of Rhizobium meliloti 1021 nodulation genes: nodD is read divergently from nodABC.
    DNA. 1985 Jun;4(3):241-8 PMID: 4006668
  16. Activation of the Bradyrhizobium japonicum nifH and nifDK operons is dependent on promoter-upstream DNA sequences.
    Nucleic Acids Res. 1986 May 27;14(10):4207-27 PMID: 3086837
  17. Regulation of nitrogen fixation genes.
    Annu Rev Genet. 1986;20:567-91 PMID: 3545064
  18. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  19. A Rhizobium meliloti symbiotic regulatory gene.
    Cell. 1984 Apr;36(4):1035-43 PMID: 6423287
  20. Organization, structure and symbiotic function of Rhizobium meliloti nodulation genes determining host specificity for alfalfa.
    Cell. 1986 Aug 1;46(3):335-43 PMID: 3731273
  21. The molybdenum--iron protein of Klebsiella pneumoniae nitrogenase. Evidence for non-identical subunits from peptide 'mapping'.
    Biochem J. 1976 May 1;155(2):383-9 PMID: 779772
  22. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  23. Regulation of nitrogen metabolism genes by nifA gene product in Klebsiella pneumoniae.
    Nature. 1983 Jan 27;301(5898):307-13 PMID: 6337346
  24. The nucleotide sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E coli K12.
    Nucleic Acids Res. 1981 Jun 25;9(12):2889-903 PMID: 6269063
  25. Plasmid insertion mutagenesis and lac gene fusion with mini-mu bacteriophage transposons.
    J Bacteriol. 1984 May;158(2):488-95 PMID: 6327606
  26. Regulation and characterization of protein products coded by the nif (nitrogen fixation) genes of Klebsiella pneumoniae.
    J Bacteriol. 1978 Oct;136(1):267-79 PMID: 361694
  27. A strong sequence homology exists between the major RNA polymerase sigma factors of Bacillus subtilis and Escherichia coli.
    J Biol Chem. 1985 Jun 25;260(12):7178-85 PMID: 2987246
  28. Mapping of the protein-coding regions of Rhizobium meliloti common nodulation genes.
    EMBO J. 1984 Aug;3(8):1705-11 PMID: 16453541
  29. In vitro synthesis of the iron-molybdenum cofactor of nitrogenase.
    Proc Natl Acad Sci U S A. 1986 Mar;83(6):1636-40 PMID: 3006060
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1987-12-00
Pages
5393-400
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC213963
Subset
IM
Databases
GENBANK
M18272
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