Home LiteratureArticle Details
PMID: 3357886 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Directional mutation pressure and neutral molecular evolution.

Sueoka N

Abstract

A quantitative theory of directional mutation pressure proposed in 1962 explained the wide variation of DNA base composition observed among different bacteria and its small heterogeneity within individual bacterial species. The theory was based on the assumption that the effect of mutation on a genome is not random but has a directionality toward higher or lower guanine-plus-cytosine content of DNA, and this pressure generates directional changes more in neutral parts of the genome than in functionally significant parts. Now that DNA sequence data are available, the theory allows the estimation of the extent of neutrality of directional mutation pressure against selection. Newly defined parameters were used in the analysis, and two apparently universal constants were discovered. Analysis of DNA sequence has revealed that practically all organisms are subject to directional mutation pressure. The theory also offers plausible explanations for the large heterogeneity in guanine-plus-cytosine content among different parts of the vertebrate genome.

MeSH Terms
Animals Bacteria/genetics Base Composition Biological Evolution Codon DNA/genetics Humans Mutation Selection, Genetic
Chemicals
Codon DNA
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Sueoka N
Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder 80309.
References (31)
31 references, click to expand
  1. A correlation between the compositions of deoxyribonucleic and ribonucleic acids.
    Nature. 1958 Jul 12;182(4628):111-2 PMID: 13566202
  2. The unusual mutagenic specificity of an E. Coli mutator gene.
    Proc Natl Acad Sci U S A. 1966 Feb;55(2):274-81 PMID: 5328724
  3. On the genetic basis of variation and heterogeneity of DNA base composition.
    Proc Natl Acad Sci U S A. 1962 Apr 15;48:582-92 PMID: 13918161
  4. Nucleotide sequence of trpE of Salmonella typhimurium and its homology with the corresponding sequence of Escherichia coli.
    J Mol Biol. 1982 Mar 5;155(3):235-46 PMID: 7042989
  5. Codon usage tabulated from the GenBank genetic sequence data.
    Nucleic Acids Res. 1986;14 Suppl:r151-97 PMID: 3703684
  6. Cloned murine T200 (Ly-5) cDNA reveals multiple transcripts within B- and T-lymphocyte lineages.
    Proc Natl Acad Sci U S A. 1987 Jan;84(1):161-5 PMID: 2948186
  7. Nucleotide sequence of a macronuclear DNA molecule coding for alpha-tubulin from the ciliate Stylonychia lemnae. Special codon usage: TAA is not a translation termination codon.
    Nucleic Acids Res. 1985 Jan 25;13(2):415-33 PMID: 2987795
  8. Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes.
    J Mol Evol. 1986;24(1-2):39-44 PMID: 3104617
  9. A Factor (or Mutator Gene) Influencing Mutation Rates in Escherichia Coli.
    Proc Natl Acad Sci U S A. 1954 Nov;40(11):1064-71 PMID: 16578437
  10. Deviation from the universal code shown by the gene for surface protein 51A in Paramecium.
    Nature. 1985 Mar 14-20;314(6007):188-90 PMID: 3974722
  11. CORRELATION BETWEEN BASE COMPOSITION OF DEOXYRIBONUCLEIC ACID AND AMINO ACID COMPOSITION OF PROTEIN.
    Proc Natl Acad Sci U S A. 1961 Aug;47(8):1141-9 PMID: 16590864
  12. Divergence and directional mutation pressures.
    Nature. 1987 Feb 19-25;325(6106):668 PMID: 3821860
  13. Non-Darwinian evolution.
    Science. 1969 May 16;164(3881):788-98 PMID: 5767777
  14. [Content of purine and pyrimidine base in desoxyribonucleic acid of bacteria].
    Ann Inst Pasteur (Paris). 1956 Aug;91(2):212-24 PMID: 13363015
  15. Compositional correlation between deoxyribonucleic acid and protein.
    Cold Spring Harb Symp Quant Biol. 1961;26:35-43 PMID: 13918160
  16. A STATISTICAL ANALYSIS OF DEOXYRIBONUCLEIC ACID DISTRIBUTION IN DENSITY GRADIENT CENTRIFUGATION.
    Proc Natl Acad Sci U S A. 1959 Oct;45(10):1480-90 PMID: 16590530
  17. Dependence of the density of deoxyribonucleic acids on guanine-cytosine content.
    Nature. 1959 May 23;183(4673):1429-31 PMID: 13657153
  18. THE RELATIVE HOMOGENEITY OF MICROBIAL DNA.
    Proc Natl Acad Sci U S A. 1959 Jul;45(7):1039-43 PMID: 16590475
  19. RNA transcription on the giant lateral loops of the lampbrush chromosomes of the American newt Notophthalmus viridescens.
    J Cell Sci. 1978 Dec;34:279-88 PMID: 748343
  20. Tetrahymena thermophila glutamine tRNA and its gene that corresponds to UAA termination codon.
    Proc Natl Acad Sci U S A. 1985 Jul;82(14):4758-62 PMID: 2991890
  21. Nucleotide sequences encoding and promoting expression of three antibiotic resistance genes indigenous to Streptomyces.
    Mol Gen Genet. 1985;199(1):26-36 PMID: 2987648
  22. The genetic code. II.
    Am Sci. 1965 Dec;53(4):477-87 PMID: 5321245
  23. Evolutionary rate at the molecular level.
    Nature. 1968 Feb 17;217(5129):624-6 PMID: 5637732
  24. The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code.
    J Mol Evol. 1985;22(3):252-71 PMID: 3001325
  25. The mosaic genome of warm-blooded vertebrates.
    Science. 1985 May 24;228(4702):953-8 PMID: 4001930
  26. Comparisons of the complete sequences of two collagen genes from Caenorhabditis elegans.
    Cell. 1982 Sep;30(2):599-606 PMID: 7139711
  27. The GenBank genetic sequence databank.
    Nucleic Acids Res. 1986 Jan 10;14(1):1-4 PMID: 3945546
  28. Altered base ratios in the DNA of an Escherichia coli mutator strain.
    Proc Natl Acad Sci U S A. 1967 Nov;58(5):1895-902 PMID: 4866980
  29. Evolution of DNA base compositions in microorganisms.
    Science. 1972 Mar 24;175(4028):1391-3 PMID: 4621783
  30. On the organization of higher chromosomes.
    Nat New Biol. 1972 Oct 4;239(92):133-4 PMID: 4633814
  31. Codon usage and tRNA content in unicellular and multicellular organisms.
    Mol Biol Evol. 1985 Jan;2(1):13-34 PMID: 3916708
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1988-04-00
Pages
2653-7
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC280056
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]