Home LiteratureArticle Details
PMID: 3368327 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Compilation of 5S rRNA and 5S rRNA gene sequences.

Nucleic acids research ·Vol. 16 Suppl ·1988-00-00 ·Pages r1-70

Wolters J, Erdmann VA

Abstract

The BERLIN RNA DATABANK as of December 31, 1987, contains a total of 509 sequences of 5S rRNAs or their genes, which is an increase of 45% over the last (1986) compilation (1). It covers sequences from 38 archaebacteria, 184 eubacteria, 14 plastids, 4 mitochondria, 258 eukaryotes and 11 eukaryotic pseudogenes. The BERLIN RNA DATABANK uses the format of the EMBL Nucleotide Sequence Data Library complemented by a Sequence Alignment (SA) field including secondary structure information as presented in this publication. The BERLIN RNA DATABANK is available on 360 or 1200 kb diskettes.

MeSH Terms
Animals Base Sequence DNA, Ribosomal/genetics Molecular Sequence Data Nucleic Acid Conformation RNA, Ribosomal/genetics RNA, Ribosomal, 5S/genetics
Chemicals
DNA, Ribosomal RNA, Ribosomal RNA, Ribosomal, 5S
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Wolters J
Institut für Biochemie, Freie Universität Berlin, FRG.
Erdmann V A
References (20)
20 references, click to expand
  1. Nucleotide sequence of 5 S RNA from Torulopsis utilis.
    FEBS Lett. 1974 Mar 15;40(1):106-9 PMID: 4604831
  2. A phylogenetic definition of the major eubacterial taxa.
    Syst Appl Microbiol. 1985;6:143-51 PMID: 11542017
  3. A newly revised classification of the protozoa.
    J Protozool. 1980 Feb;27(1):37-58 PMID: 6989987
  4. A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.
    Nucleic Acids Res. 1981 Apr 24;9(8):1885-904 PMID: 6165963
  5. Universal secondary structures of prokaryotic and eukaryotic ribosomal 5S RNA derived from comparative analysis of their sequences.
    Acta Biol Med Ger. 1981;40(6):K19-24 PMID: 7034426
  6. Conservation of secondary structure in 5 S ribosomal RNA: a uniform model for eukaryotic, eubacterial, archaebacterial and organelle sequences is energetically favourable.
    Biochimie. 1982 May;64(5):311-29 PMID: 6809061
  7. Comparative sequence analysis as an approach to evaluating structure, function, and evolution of 5S and 5.8S ribosomal RNAs.
    Can J Biochem. 1982 Apr;60(4):480-9 PMID: 7104825
  8. Generalized structures of the 5S ribosomal RNAs.
    Nucleic Acids Res. 1982 Nov 25;10(22):7323-44 PMID: 7155895
  9. Consensus structure and evolution of 5S rRNA.
    Nucleic Acids Res. 1983 Feb 11;11(3):893-900 PMID: 6835839
  10. 5S rRNA sequences from eight basidiomycetes and fungi imperfecti.
    Nucleic Acids Res. 1983 Nov 11;11(21):7625-30 PMID: 6647033
  11. 5S RNA structure and interaction with transcription factor A. 1. Ribonuclease probe of the structure of 5S RNA from Xenopus laevis oocytes.
    Biochemistry. 1984 Nov 20;23(24):5752-9 PMID: 6084515
  12. 5S RNA structure and interaction with transcription factor A. 2. Ribonuclease probe of the 7S particle from Xenopus laevis immature oocytes and RNA exchange properties of the 7S particle.
    Biochemistry. 1984 Nov 20;23(24):5759-66 PMID: 6084516
  13. The kingdom Protista and its 45 phyla.
    Biosystems. 1984;17(2):87-126 PMID: 6395918
  14. Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984.
    Nucleic Acids Res. 1985 May 10;13(9):3021-30 PMID: 2582368
  15. Nuclease S1 analysis of eubacterial 5S rRNA secondary structure.
    J Mol Evol. 1985;22(3):237-42 PMID: 3001324
  16. Collection of published 5S, 5.8S and 4.5S ribosomal RNA sequences.
    Nucleic Acids Res. 1986;14 Suppl:r1-59 PMID: 2422630
  17. Evolutionary change in 5S rRNA secondary structure and a phylogenic tree of 352 5S rRNA species.
    Biosystems. 1986;19(3):163-72 PMID: 3779044
  18. Variable base pairing in a helix of eubacterial 5 S ribosomal RNA points to the existence of a conformational switch.
    FEBS Lett. 1987 Jun 15;217(2):191-6 PMID: 2439375
  19. A model for the interaction of nucleic acids with transcription factor IIIA.
    FEBS Lett. 1987 Jun 15;217(2):197-202 PMID: 3595851
  20. 5S RNA secondary structure.
    Nature. 1975 Aug 7;256(5517):505-7 PMID: 808733
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/16.suppl.r1
Published
1988-00-00
Pages
r1-70
Language
English
Region
England
NLM ID
0411011
PMCID
PMC340909
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/16.suppl.r1 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2