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PMID: 33870858 Published · ppublish English Journal Article

The screening of immune-related biomarkers for prognosis of lung adenocarcinoma.

Bioengineered ·Vol. 12 ·No. 1 ·2021-00-00 ·页码 1273-1285

Liu Z, Sun D, Zhu Q, Liu X

Abstract

Lung adenocarcinoma (LUAD) accounts for a frequently seen non-small cell lung cancer (NSCLC) histological subtype, and it is associated with dismal prognostic outcome. However, the benefits of traditional treatment are still limited, and the efficacies of immunotherapy are quite different. Therefore, it is of great significance to identify novel immune-related therapeutic targets in lung adenocarcinoma. In this study, we identified a set of immune-related biomarkers for prognosis of lung adenocarcinoma, which could provide new ideas for immunotherapy of lung adenocarcinoma. Datasets related to LUAD were filtered from the GEO database. The appropriate packages were used to identify differentially expressed genes (DEGs) and to carry out enrichment analysis, followed by the construction of prognostic biomarkers. The Kaplan-Meier (K-M) curves were plotted to analyze patient survival based on hub genes. Associations between the expression of selected biomarkers and six types of tumor-infiltrating immune cells were evaluated based on the online tool TIMER. After analyzing five GEO datasets(GSE32867, GSE46539, GSE63459, GSE75037 and GSE116959), we discovered altogether 67 DEGs, among which, 15 showed up-regulation while 52 showed down-regulation. Enrichments of integrated DEGs were identified in the ontology categories. CAV1, CFD, FMO2 and CLEC3B were eventually selected as independent prognostic biomarkers, they were correlated with clinical outcomes of LUAD patients. Moreover, a positive correlation was observed between biomarker expression and all different types of immune infiltration, and the expression level of the four biomarkers was all positively related to macrophage.

Keywords
Lung adenocarcinoma (LUAD) bioinformatics analysis immune infiltration
MeSH 主题词
Adenocarcinoma of Lung/genetics,immunology Biomarkers, Tumor/immunology Databases, Genetic Gene Expression Profiling Gene Expression Regulation, Neoplastic Gene Ontology Humans Lung Neoplasms/genetics,immunology Prognosis Reproducibility of Results
化学物质
Biomarkers, Tumor
作者与单位
共 4 位作者,点击展开单位 / ORCID
Liu Zhonghui
Department of Geriatrics, Peking University First Hospital, Beijing, China.
Sun Dan
Department of Geriatrics, Peking University First Hospital, Beijing, China.
Zhu Qing
Institutes of Biomedical Sciences, Shanghai Medical College of Fudan University, Shanghai, China.
Liu Xinmin
Department of Geriatrics, Peking University First Hospital, Beijing, China.
Article Info
Journal
Bioengineered
Abbr.
Bioengineered
ISSN
2165-5987
Published
2021-00-00
页码
1273-1285
Language
English
Country/Region
United States
NLM ID
101581063
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