Home LiteratureArticle Details
PMID: 3540934 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Nucleotide binding by a 24-residue peptide from the RecA protein of Escherichia coli.

Knight KL, McEntee K

Abstract

We have recently demonstrated that two ATP analog affinity labels, 8-azidoadenosine 5'-triphosphate (N3ATP) and 5'-p-fluorosulfonylbenzoyladenosine (5'FSBA), covalently modify RecA protein of Escherichia coli at a specific tyrosine residue (Tyr-264) located within a 24-residue tryptic peptide (T-31) spanning residues 257-280. Here we show that N3ATP efficiently modifies purified peptide T-31 and show that the interaction is specific by the following criteria: photolabeling of peptide T-31 is saturable with respect to the N3ATP concentration; photolabeling is competitive with ATP and adenosine but not with adenine, UTP, or TTP; and other peptides derived from RecA protein were poor substrates for photolabeling except for one fragment that showed a nonspecific interaction with the photoaffinity analog. Analysis of N3ATP-modified T-31 shows that the photolabel attaches to more than one site within the peptide. These data argue that peptide T-31 contains some sites of contact for adenine and ribose moieties of ATP when it is bound to RecA protein.

MeSH Terms
Adenosine Triphosphate/analogs & derivatives,metabolism Affinity Labels Amino Acid Sequence Binding Sites Escherichia coli Peptide Fragments/metabolism Photochemistry Protein Binding Rec A Recombinases/metabolism Structure-Activity Relationship
Chemicals
Affinity Labels Peptide Fragments Adenosine Triphosphate Rec A Recombinases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Knight K L
McEntee K
References (35)
35 references, click to expand
  1. Interactions of a photo-affinity ATP analog with cation-stimulated adenosine triphosphatases of human red cell membranes.
    Proc Natl Acad Sci U S A. 1974 Sep;71(9):3367-71 PMID: 4279407
  2. Purified Escherichia coli recA protein catalyzes homologous pairing of superhelical DNA and single-stranded fragments.
    Proc Natl Acad Sci U S A. 1979 Apr;76(4):1638-42 PMID: 156361
  3. Studies of adenosine triphosphate transphosphorylases. XIV. Equilibrium binding properties of the crystalline rabbit and calf muscle ATP--AMP transphosphorylase (adenylate kinase) and derived peptide fragments.
    Arch Biochem Biophys. 1979 Jun;195(1):155-77 PMID: 224811
  4. Characteristics of purified recA protein and the regulation of its synthesis in vivo.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 2:909-15 PMID: 158476
  5. Sequences of the recA gene and protein.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2611-5 PMID: 6930655
  6. Cleavage of the Escherichia coli lexA protein by the recA protease.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3225-9 PMID: 6447873
  7. A simple and rapid procedure for the large scale purification of the recA protein of Escherichia coli.
    J Biol Chem. 1981 May 10;256(9):4676-8 PMID: 7012155
  8. Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Characterization of ATP hydrolysis.
    J Biol Chem. 1981 Aug 25;256(16):8829-34 PMID: 7021552
  9. Binding of the recA protein of Escherichia coli to single- and double-stranded DNA.
    J Biol Chem. 1981 Aug 25;256(16):8835-44 PMID: 7021553
  10. Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Steady state kinetic analysis of ATP hydrolysis.
    J Biol Chem. 1981 Aug 25;256(16):8845-9 PMID: 6455429
  11. Hydrolysis of nucleoside triphosphates catalyzed by the recA protein of Escherichia coli. Hydrolysis of UTP.
    J Biol Chem. 1981 Aug 25;256(16):8856-8 PMID: 7021554
  12. recA protein-promoted DNA strand exchange. Stable complexes of recA protein and single-stranded DNA formed in the presence of ATP and single-stranded DNA binding protein.
    J Biol Chem. 1982 Jul 25;257(14):8523-32 PMID: 7045124
  13. Cloned truncated recA genes in E. coli. I. Effect on radiosensitivity and recA+ dependent processes.
    Mol Gen Genet. 1982;185(1):93-8 PMID: 7045578
  14. Cloned truncated recA genes in E. coli II. Effects of truncated gene products on in vivo recA+ protein activity.
    Mol Gen Genet. 1982;185(1):99-104 PMID: 6283314
  15. Molecular mechanisms in genetic recombination.
    Annu Rev Biochem. 1982;51:727-61 PMID: 6287923
  16. ADP-mediated dissociation of stable complexes of recA protein and single-stranded DNA.
    J Biol Chem. 1983 Feb 25;258(4):2586-92 PMID: 6337158
  17. Homologous pairing and strand exchange in genetic recombination.
    Annu Rev Genet. 1982;16:405-37 PMID: 6297377
  18. The sites of labeling of the beta-subunit of bovine mitochondrial F1-ATPase with 8-azido-ATP.
    J Biol Chem. 1983 Aug 10;258(15):9307-13 PMID: 6223927
  19. Functional domains of Escherichia coli recA protein deduced from the mutational sites in the gene.
    Mol Gen Genet. 1984;193(2):288-92 PMID: 6363880
  20. Cysteinyl residues of Escherichia coli recA protein.
    Biochemistry. 1984 May 22;23(11):2363-7 PMID: 6383464
  21. Covalent modification of the recA protein from Escherichia coli with the photoaffinity label 8-azidoadenosine 5'-triphosphate.
    J Biol Chem. 1985 Jan 25;260(2):867-72 PMID: 3881428
  22. Isolation of altered recA polypeptides and interaction with ATP and DNA.
    J Biol Chem. 1985 Jan 25;260(2):949-55 PMID: 3881430
  23. Affinity labeling of a tyrosine residue in the ATP binding site of the recA protein from Escherichia coli with 5'-p-fluorosulfonylbenzoyladenosine.
    J Biol Chem. 1985 Aug 25;260(18):10177-84 PMID: 3894365
  24. Tyrosine 264 in the recA protein from Escherichia coli is the site of modification by the photoaffinity label 8-azidoadenosine 5'-triphosphate.
    J Biol Chem. 1985 Aug 25;260(18):10185-91 PMID: 3894366
  25. Kinetics of DNA renaturation catalyzed by the RecA protein of Escherichia coli.
    Biochemistry. 1985 Jul 30;24(16):4345-51 PMID: 2996595
  26. NMR studies of the MgATP binding site of adenylate kinase and of a 45-residue peptide fragment of the enzyme.
    Biochemistry. 1985 Aug 13;24(17):4680-94 PMID: 2998457
  27. Monoclonal antibodies with specific effects on partial activities of recA protein of Escherichia coli.
    J Biol Chem. 1985 Dec 15;260(29):15402-5 PMID: 2933399
  28. ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins.
    Proc Natl Acad Sci U S A. 1986 Feb;83(4):907-11 PMID: 2869483
  29. Studies of asymmetry in the three-dimensional structure of lobster D-glyceraldehyde-3-phosphate dehydrogenase.
    J Biol Chem. 1975 Dec 10;250(23):9137-62 PMID: 127793
  30. Some genetic consequences of changes in the level of recA gene function in Escherichia coli K-12.
    Genetics. 1976 Dec;84(4):675-95 PMID: 795714
  31. Characterization of lexB mutations in Escherichia coli K-12.
    J Bacteriol. 1977 Aug;131(2):572-82 PMID: 328486
  32. Substrate positions and induced-fit in crystalline adenylate kinase.
    J Mol Biol. 1977 Jul;114(1):37-45 PMID: 198550
  33. Identification of a tyrosine residue at a nucleotide binding site in the beta subunit of the mitochondrial ATPase with p-fluorosulfonyl[14C]-benzoyl-5'-adenosine.
    J Biol Chem. 1978 Sep 10;253(17):6100-6 PMID: 150416
  34. ATP-dependent renaturation of DNA catalyzed by the recA protein of Escherichia coli.
    Proc Natl Acad Sci U S A. 1979 Jan;76(1):126-30 PMID: 370822
  35. Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli.
    Proc Natl Acad Sci U S A. 1979 Jun;76(6):2615-9 PMID: 379861
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1986-12-00
Pages
9289-93
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC387123
Subset
IM
Grants
NIGMS NIH HHS · GM29558 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]