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PMID: 3582365 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

A novel endoribonuclease cleaves at a priming site of mouse mitochondrial DNA replication.

The EMBO journal ·Vol. 6 ·No. 2 ·1987-02-00 ·Pages 409-17

Chang DD, Clayton DA

Abstract

Priming at the mouse mitochondrial origin of heavy-strand DNA replication is effected by transcripts from the light-strand promoter. The transition from RNA synthesis to DNA synthesis occurs at specific locations between 75 and 165 nucleotides downstream from the transcriptional initiation site. We have identified and partially purified an endonucleolytic activity that cleaves RNA accurately near one of these transition sites; this finding implies a role of specific RNA processing in DNA replication. Cleavage products possess 5'-phosphoryl and 3'-hydroxyl termini. Heterologous assays using mouse or human mitochondrial endoribonuclease with substrates containing the sequences of the human or mouse mitochondrial origins of heavy-strand DNA replication suggest that selection of the cleavage site is guided by sequences adjacent to the actual position of cleavage.

MeSH Terms
Animals Base Sequence Cells, Cultured DNA Replication DNA, Mitochondrial/genetics,metabolism Endodeoxyribonucleases/isolation & purification,metabolism Mice Plasmids Substrate Specificity
Chemicals
DNA, Mitochondrial Endodeoxyribonucleases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Chang D D
Clayton D A
References (33)
33 references, click to expand
  1. Mapping adenines, guanines, and pyrimidines in RNA.
    Nucleic Acids Res. 1977 Aug;4(8):2527-38 PMID: 409999
  2. 3'-terminal labelling of RNA with T4 RNA ligase.
    Nature. 1978 Oct 12;275(5680):560-1 PMID: 692735
  3. Use of in vitro 32P labeling in the sequence analysis of nonradioactive tRNAs.
    Methods Enzymol. 1979;59:58-109 PMID: 220499
  4. Mechanism of mitochondrial DNA replication in mouse L-cells: localization and sequence of the light-strand origin of replication.
    J Mol Biol. 1979 Dec 5;135(2):327-51 PMID: 537081
  5. Mechanism of mitochondrial DNA replication in mouse L-cells: RNA priming during the initiation of heavy-strand synthesis.
    J Mol Biol. 1979 Dec 5;135(2):353-68 PMID: 537082
  6. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  7. Precise localization and nucleotide sequence of the two mouse mitochondrial rRNA genes and three immediately adjacent novel tRNA genes.
    Cell. 1980 Nov;22(1 Pt 1):157-70 PMID: 7428037
  8. Sequence and organization of the human mitochondrial genome.
    Nature. 1981 Apr 9;290(5806):457-65 PMID: 7219534
  9. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA.
    Nucleic Acids Res. 1981 Oct 24;9(20):5411-21 PMID: 7301592
  10. Minimization of variation in the response to different proteins of the Coomassie blue G dye-binding assay for protein.
    Anal Biochem. 1981 Sep 1;116(1):53-64 PMID: 7304986
  11. Processing of procaryotic ribonucleic acid.
    Microbiol Rev. 1981 Dec;45(4):502-41 PMID: 6173734
  12. Sequence and gene organization of mouse mitochondrial DNA.
    Cell. 1981 Oct;26(2 Pt 2):167-80 PMID: 7332926
  13. Replication of animal mitochondrial DNA.
    Cell. 1982 Apr;28(4):693-705 PMID: 6178513
  14. Precise nucleotide location of the 5' ends of RNA-primed nascent light strands of mouse mitochondrial DNA.
    J Mol Biol. 1982 Nov 25;162(1):1-16 PMID: 6296400
  15. Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease.
    Cell. 1983 Feb;32(2):525-36 PMID: 6186398
  16. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.
    Cell. 1983 Dec;35(3 Pt 2):849-57 PMID: 6197186
  17. Isolation of mammalian mitochondrial DNA and RNA and cloning of the mitochondrial genome.
    Methods Enzymol. 1983;97:426-34 PMID: 6197614
  18. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.
    Nucleic Acids Res. 1984 Sep 25;12(18):7035-56 PMID: 6091052
  19. Role of the conserved AAUAAA sequence: four AAUAAA point mutants prevent messenger RNA 3' end formation.
    Science. 1984 Nov 30;226(4678):1045-51 PMID: 6208611
  20. Possible structures of homopurine-homopyrimidine S1-hypersensitive sites.
    Nucleic Acids Res. 1984 Nov 12;12(21):8059-72 PMID: 6095187
  21. RNA splicing in neurospora mitochondria: self-splicing of a mitochondrial intron in vitro.
    Cell. 1984 Dec;39(3 Pt 2):631-41 PMID: 6096015
  22. Priming of human mitochondrial DNA replication occurs at the light-strand promoter.
    Proc Natl Acad Sci U S A. 1985 Jan;82(2):351-5 PMID: 2982153
  23. Self-splicing of yeast mitochondrial ribosomal and messenger RNA precursors.
    Cell. 1985 Apr;40(4):759-66 PMID: 2580635
  24. Transcription termination and 3' processing: the end is in site!
    Cell. 1985 Jun;41(2):349-59 PMID: 2580642
  25. Six unidentified reading frames of human mitochondrial DNA encode components of the respiratory-chain NADH dehydrogenase.
    Nature. 1985 Apr 18-24;314(6012):592-7 PMID: 3921850
  26. Accurate cleavage and polyadenylation of exogenous RNA substrate.
    Cell. 1985 Jul;41(3):845-55 PMID: 2408761
  27. A structural basis for S1 nuclease sensitivity of double-stranded DNA.
    Cell. 1985 Aug;42(1):271-80 PMID: 2990727
  28. Replication priming and transcription initiate from precisely the same site in mouse mitochondrial DNA.
    EMBO J. 1985 Jun;4(6):1559-67 PMID: 2411543
  29. In vitro replication of human mitochondrial DNA: accurate initiation at the origin of light-strand synthesis.
    Cell. 1985 Oct;42(3):951-8 PMID: 2996785
  30. The intervening sequence RNA of Tetrahymena is an enzyme.
    Science. 1986 Jan 31;231(4737):470-5 PMID: 3941911
  31. Mutations downstream of the polyadenylation site of a Xenopus beta-globin mRNA affect the position but not the efficiency of 3' processing.
    Cell. 1986 Jul 18;46(2):263-70 PMID: 2872970
  32. Mechanism of recognition of the 5' splice site in self-splicing group I introns.
    Nature. 1986 Jul 3-9;322(6074):86-9 PMID: 3636598
  33. Precise assignment of the light-strand promoter of mouse mitochondrial DNA: a functional promoter consists of multiple upstream domains.
    Mol Cell Biol. 1986 Sep;6(9):3253-61 PMID: 3023972
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1987-02-00
Pages
409-17
Language
English
Region
England
NLM ID
8208664
PMCID
PMC553411
Subset
IM
Grants
NIGMS NIH HHS · GM-07365-11 · United States
NIGMS NIH HHS · GM-33088-16 · United States
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