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PMID: 41726154 已发表 · epublish 英语

Draft Genomes of Geographically Distinct Strains and Progeny of the Ectomycorrhizal Basidiomycete Laccaria bicolor.

Journal of genomics ·第 14 卷

Martin FM, Morin E, Kuo A, Miquel I, Labbé J, Tacon FL, Fauchery L, Kohler A, Andreopoulos W, Copeland A, Sun H, Salamov A, Lipzen A, Han J, LaButti K, Tritt A, Barry K, Grigoriev IV

摘要

The ectomycorrhizal fungus Laccaria bicolor is a key symbiotic mutualist in forest ecosystems, where it enhances nutrient uptake and promotes the growth of host trees. Here, we present genome assemblies of 14 geographically distinct strains and progeny of L. bicolor, providing new insights into the intraspecific genomic diversity. Pangenome analysis revealed substantial variation in assembly size (42-96 Mbp), gene content (16,084-26,800 genes), and single nucleotide polymorphism (SNP) density (0.04-12.08 SNPs/kb). This variation likely reflects genuine biological differences among strains adapted to diverse environmental conditions, although differences in assembly quality and repeat content may also play a role. These genomic resources, comprising draft genome assemblies with comprehensive annotations, will facilitate comparative studies of the genetic diversity and functional traits underlying the ecological success of this model ectomycorrhizal fungus.

关键词
Ectomycorrhizal fungi Laccaria bicolor comparative genomics genetic diversity pangenome symbiosis
文献信息
期刊
Journal of genomics
期刊简称
J Genomics
ISSN
1839-9940
语言
英语
国家/地区
Australia
NLM ID
101623535
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