Abstract
Several antibiotics, netropsin, distamycin A, actinomycin D, Hoechst 33258 and olivomycin, which demonstrate base specificity in their DNA binding properties have been found to alter the electrophoretic mobility of DNA restriction fragments in native polyacrylamide gels. The antibiotics mostly reduced the migration of larger DNA fragments, but netropsin and Hoechst 33258 were observed to increase the migration rate of several DNA fragments of intermediate size. DNA fragments of similar molecular weight which comigrate as a single gel band can at times be separated as the result of differential mobility shifts promoted by antibiotic DNA complex formations.
MeSH Terms
Anti-Bacterial Agents
Chemical Phenomena
Chemistry
DNA Restriction Enzymes
DNA, Viral
Dactinomycin
Distamycins
Electrophoresis, Polyacrylamide Gel
Ethidium
Molecular Weight
Netropsin
Olivomycins
Chemicals
Anti-Bacterial Agents
DNA, Viral
Distamycins
Dactinomycin
Olivomycins
Netropsin
DNA Restriction Enzymes
Ethidium
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Loucks E
Chaconas G
Blakesley R W
Wells R D
van de Sande J H
References (20)
20 references, click to expand
-
ACTINOMYCIN BINDING TO DNA: MECHANISM AND SPECIFICITY.
J Mol Biol. 1965 Mar;11:445-57
PMID: 14267267
-
Netropsin-poly(dA-dT) complex in solution: structure and dynamics of antibiotic-free base pair regions and those centered on bound netropsin.
Proc Natl Acad Sci U S A. 1977 Dec;74(12):5207-11
PMID: 271945
-
The use of netropsin with CsCl gradients for the analysis of DNA and its application to restriction nuclease fragments of ribosomal DNA from Physarum polycephalum.
Eur J Biochem. 1978 Jan 16;82(2):569-76
PMID: 564266
-
Visualization of drug-nucleic acid interactions at atomic resolution. III. Unifying structural concepts in understanding drug-DNA interactions and their broader implications in understanding protein-DNA interactions.
J Mol Biol. 1977 Aug 15;114(3):333-65
PMID: 71352
-
Duplex regions in "single-stranded" phiX174 DNA are cleaved by a restriction endonuclease from Haemophilus aegyptius.
J Biol Chem. 1977 Oct 25;252(20):7300-6
PMID: 71298
-
End labeling of enzymatically decapped mRNA.
Nucleic Acids Res. 1977 Dec;4(12):4165-74
PMID: 202926
-
Mapping of closed circular DNAs by cleavage with restriction endonucleases and calibration by agarose gel electrophoresis.
Proc Natl Acad Sci U S A. 1977 Mar;74(3):851-5
PMID: 191836
-
The role of DNA structure in genetic regulation.
CRC Crit Rev Biochem. 1977;4(3):305-40
PMID: 319949
-
Nucleotide sequence of bacteriophage phi X174 DNA.
Nature. 1977 Feb 24;265(5596):687-95
PMID: 870828
-
Use of a sequence-specific DNA-binding ligand to probe the environments of EcoRI restriction endonuclease cleavage sites.
Eur J Biochem. 1976 Aug 16;67(2):367-71
PMID: 786629
-
The use of antibiotics actinomycin D and distamycin A for mapping of phage lambda HindIII fragments.
FEBS Lett. 1976 Nov;70(1):91-5
PMID: 1086799
-
Protection of particular cleavage sites of restriction endonucleases by distamycin A and actinomycin D.
Nucleic Acids Res. 1976 Sep;3(9):2293-301
PMID: 967694
-
The organization of highly repeated DNA sequences in Drosophila melanogaster chromosomes.
Cold Spring Harb Symp Quant Biol. 1974;38:405-16
PMID: 4133985
-
Physicochemical properties of complexes between deoxyribonucleic acid and antibiotics which affect ribonucleic acid synthesis (actinomycin, daunomycin, cinerubin, nogalamycin, chormomycin, mithramycin, and olivomycin).
Biochemistry. 1966 Jan;5(1):236-44
PMID: 4161040
-
Netropsin. A specific probe for A-T regions of duplex deoxyribonucleic acid.
J Biol Chem. 1974 Nov 10;249(21):6719-31
PMID: 4371420
-
'Single-stranded' DNA from phiX174 and M13 is cleaved by certain restriction endonucleases.
Nature. 1975 Oct 2;257(5525):421-2
PMID: 809717
-
Purification and some characteristics of 5S DNA from Xenopus laevis.
Proc Natl Acad Sci U S A. 1971 Dec;68(12):3175-9
PMID: 5289255
-
Interactions of heteroaromatic compounds with nucleic acids. A - T-specific non-intercalating DNA ligands.
Eur J Biochem. 1975 Jun;54(2):385-94
PMID: 1175591
-
Studies on the binding of actinomycin D to DNA and DNA model polymers.
J Mol Biol. 1970 Apr 28;49(2):319-42
PMID: 5464945
-
Complex formation between ethidium bromide and nucleic acids.
J Mol Biol. 1965 Aug;13(1):269-82
PMID: 5859041