Home LiteratureArticle Details
PMID: 461193 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Evidence that populations of Dictyostelium single-copy mRNA transcripts carry common repeat sequences.

Nucleic acids research ·Vol. 6 ·No. 7 ·1979-06-11 ·Pages 2403-22

Kindle KL, Firtel RA

Abstract

Two recombinant plasmids, M4 and KH10, carrying Dictyostelium DNA inserted into the Eco RI restriction endonuclease site of pMB9 by poly(dA)-poly(dT) tailing, were selected for study because they are complementary to abundant mRNA populations from Dictyostelium. Both plasmids have been shown to hybridize a heterogeneous size class of mRNAs which, in the case of KH10, comprise 5-10% of the pulse-labeled poly(A)+ RNA from vegetative cells. Analysis of the sequence organization of the two pieces of Dictyostelium DNA shows that they consist mostly of single-copy sequences with a short DNA sequence which is repeated in the genome and interspersed with single-copy DNA. These and other results suggest that the majority of the hybridization of pulse-labeled mRNA to M4 and KH10 is to the short "repeated" DNA sequences. In the genome, members of these repeat families appear to be transcribed onto a population of different single-copy mRNAs. Additional results show that M4 DNA contains a sequence which is entirely complementary to a discrete mRNA.

MeSH Terms
Base Sequence DNA Restriction Enzymes DNA, Recombinant/metabolism Dictyostelium/metabolism Kinetics Nucleic Acid Denaturation Nucleic Acid Hybridization Plasmids Poly A/metabolism Poly dA-dT RNA, Messenger/biosynthesis Transcription, Genetic
Chemicals
DNA, Recombinant RNA, Messenger Poly A Poly dA-dT DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Kindle K L
Firtel R A
References (28)
28 references, click to expand
  1. Organization of the ribosomal RNA genes of Dictyostelium discoideum: mapping of the nontranscribed spacer regions.
    Cell. 1976 Dec;9(4 Pt 1):605-13 PMID: 1034500
  2. Messenger RNA in heat-shocked Drosophila cells.
    J Mol Biol. 1977 Feb 5;109(4):559-87 PMID: 403287
  3. Multiple, heterogeneous actin genes in Dictyostelium.
    Cell. 1978 Nov;15(3):789-800 PMID: 728991
  4. The structure of M6, a recombinant plasmid containing Dictyostelium DNA homologous to actin messenger RNA.
    Cell. 1978 Nov;15(3):779-88 PMID: 728990
  5. Identification and analysis of Dictyostelium actin genes, a family of moderately repeated genes.
    Cell. 1978 Nov;15(3):763-78 PMID: 728989
  6. Enhanced autoradiographic detection of 32P and 125I using intensifying screens and hypersensitized film.
    FEBS Lett. 1977 Oct 15;82(2):314-6 PMID: 913604
  7. A simple method for DNA restriction site mapping.
    Nucleic Acids Res. 1976 Sep;3(9):2387-98 PMID: 787937
  8. A small nuclear precursor of messenger RNA in the cellular slime mold Dictyostelium discoideum.
    J Mol Biol. 1973 Sep 15;79(2):295-314 PMID: 4796769
  9. Characterization of the genome of the cellular slime mold Dictyostelium discoideum.
    J Mol Biol. 1972 May 28;66(3):339-61 PMID: 4556574
  10. Physical characterization of deoxyribonucleic acids in Dictyostelium discoideum.
    Arch Biochem Biophys. 1971 May;144(1):127-37 PMID: 4940597
  11. Biochemical method for inserting new genetic information into DNA of Simian Virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of Escherichia coli.
    Proc Natl Acad Sci U S A. 1972 Oct;69(10):2904-9 PMID: 4342968
  12. Rate of fixation of nucleotide substitutions in evolution.
    Nature. 1969 Oct 11;224(5215):149-54 PMID: 5343515
  13. Gel electrophoresis of avian leukosis and sarcoma viral RNA in formamide: comparison with other viral and cellular RNA species.
    J Virol. 1973 Sep;12(3):594-9 PMID: 4355856
  14. Structural organization and processing of the genetic transcript in the cellular slime mold Dictyostelium discoideum.
    Fed Proc. 1976 Jan;35(1):13-22 PMID: 942701
  15. Structural organization of the genome of the cellular slime mold Dictyostelium discoideum: interspersion of repetitive and single-copy DNA sequences.
    Cell. 1975 Aug;5(4):401-11 PMID: 1171729
  16. Complexity of cytoplasmic RNA in different mouse tissues measured by hybridization of polyadenylated RNA to complementary DNA.
    Biochemistry. 1975 Apr 8;14(7):1379-85 PMID: 47757
  17. Nonrepetitive DNA sequence representation in sea urchin embryo messenger RNA.
    Proc Natl Acad Sci U S A. 1973 Dec;70(12):3516-20 PMID: 4519642
  18. Two classes of messenger RNA in cultured rat cells: repetitive sequence transcripts and unique sequence transcripts.
    J Mol Biol. 1974 Dec 25;90(4):649-63 PMID: 4475699
  19. Repetitive and non-repetitive sequence in sea urchin heterogeneous nuclear RNA.
    J Mol Biol. 1974 May 5;85(1):103-26 PMID: 4835730
  20. Relative positions of the "repetitive", "unique" and poly(A) fragments of mRNA.
    Nature. 1974 Apr 5;248(448):486-90 PMID: 4824345
  21. Enzymatic end-to end joining of DNA molecules.
    J Mol Biol. 1973 Aug 15;78(3):453-71 PMID: 4754844
  22. Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation.
    Proc Natl Acad Sci U S A. 1976 Feb;73(2):415-9 PMID: 1108024
  23. Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene.
    Proc Natl Acad Sci U S A. 1975 Oct;72(10):3961-5 PMID: 1105573
  24. Methylmercury as a reversible denaturing agent for agarose gel electrophoresis.
    Anal Biochem. 1976 Jan;70(1):75-85 PMID: 1259158
  25. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  26. The distribution of rapidly hybridizing RNA sequences in heterogeneous nuclear RNA and mRNA from HeLa cells.
    J Cell Physiol. 1970 Dec;76(3):349-56 PMID: 5502353
  27. Thermal transitions in mixtures of polydeoxyribodinucleotides.
    Biopolymers. 1970;9(9):1105-17 PMID: 5449437
  28. Gene regulation for higher cells: a theory.
    Science. 1969 Jul 25;165(3891):349-57 PMID: 5789433
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1979-06-11
Pages
2403-22
Language
English
Region
England
NLM ID
0411011
PMCID
PMC327862
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]