Home LiteratureArticle Details
PMID: 6089113 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Sequence analysis of Vicia faba repeated DNA, the FokI repeat element.

Nucleic acids research ·Vol. 12 ·No. 16 ·1984-08-24 ·Pages 6415-26

Kato A, Yakura K, Tanifuji S

Abstract

A type of highly repeated DNA sequences present in the genome of Vicia faba was detected by digestion its nuclear DNA with FokI endonuclease and fractionating the digests on polyacrylamide gels. Four fragments of 59, 108, 177 and 246 bp of the FokI repeated sequences were collected from the gels and their primary structures were determined by the method of Maxam and Gilbert. These repeated DNA sequences were shown to be a multiple tandem array of a 59 bp sequence element. And its nucleotide sequence was almost completely conserved among all the sequence members of each the size class and also among these classes. This sequence element consists of a duplet of an about the duplet has an incomplete dyad symmetrical structure.

MeSH Terms
Base Sequence DNA Restriction Enzymes/metabolism DNA, Satellite/genetics Deoxyribonucleases, Type II Site-Specific Plants/genetics Repetitive Sequences, Nucleic Acid Species Specificity
Chemicals
DNA, Satellite DNA Restriction Enzymes endodeoxyribonuclease FokI Deoxyribonucleases, Type II Site-Specific
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Kato A
Yakura K
Tanifuji S
References (27)
27 references, click to expand
  1. Nucleotide sequence of bovine 1.715 satellite DNA and its relation to other bovine satellite sequences.
    J Mol Biol. 1982 Jun 25;158(2):293-304 PMID: 7120413
  2. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  3. A membrane-filter technique for the detection of complementary DNA.
    Biochem Biophys Res Commun. 1966 Jun 13;23(5):641-6 PMID: 5963888
  4. Sequence analysis of bovine satellite I DNA (1.715 gm/cm3).
    Nucleic Acids Res. 1982 Feb 25;10(4):1271-81 PMID: 6280137
  5. Localisation of satellite DNA sequences in nuclei and chromosomes of two plants.
    Nature. 1975 Sep 11;257(5522):152-5 PMID: 1161019
  6. Nucleotide sequence definition of a major human repeated DNA, the Hind III 1.9 kb family.
    Nucleic Acids Res. 1982 May 25;10(10):3211-9 PMID: 6285292
  7. Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5201-5 PMID: 6159641
  8. Analysis of Drosophila melanogaster satellite IV with restriction endonuclease MboII.
    J Mol Biol. 1977 Aug 15;114(3):441-9 PMID: 409849
  9. A cluster of repetitive elements within a 700 base pair region in the mouse genome.
    Nucleic Acids Res. 1983 Apr 11;11(7):2177-84 PMID: 6188111
  10. Selfish genes, the phenotype paradigm and genome evolution.
    Nature. 1980 Apr 17;284(5757):601-3 PMID: 6245369
  11. Simple repeated sequences in human satellite DNA.
    Nucleic Acids Res. 1982 Jan 22;10(2):547-63 PMID: 6278420
  12. Organization of highly repetitive satellite DNA of two Cucurbitaceae species (Cucumis melo and Cucumis sativus).
    Nucleic Acids Res. 1982 Jan 22;10(2):631-44 PMID: 6278425
  13. Regulation of gene expression: possible role of repetitive sequences.
    Science. 1979 Jun 8;204(4397):1052-9 PMID: 451548
  14. Rapidly labeled intermediates in DNA replication in higher plants.
    Biochim Biophys Acta. 1975 Jul 7;395(3):314-21 PMID: 1148238
  15. Sequence arrangement of a highly methylated satellite DNA of a plant, Scilla: A tandemly repeated inverted repeat.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):338-42 PMID: 16592953
  16. Selfish DNA: the ultimate parasite.
    Nature. 1980 Apr 17;284(5757):604-7 PMID: 7366731
  17. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  18. Satellite Ic: a possible link between the satellite DNAs of D. virilis and D. melanogaster.
    Cell. 1979 Jul;17(3):615-21 PMID: 113107
  19. Highly repeated DNA sequence limited to knob heterochromatin in maize.
    Proc Natl Acad Sci U S A. 1981 Jul;78(7):4490-4 PMID: 16593063
  20. Consensus sequence of mouse satellite DNA indicates it is derived from tandem 116 basepair repeats.
    FEBS Lett. 1981 Jun 29;129(1):25-8 PMID: 7274465
  21. Dictyostelium 17S, 25S, and 5S rDNAs lie within a 38,000 base pair repeated unit.
    Cell. 1976 Nov;9(3):431-8 PMID: 1033038
  22. A molecular description of telometic heterochromatin in secale species.
    Cell. 1980 Feb;19(2):545-60 PMID: 6244112
  23. Nucleotide sequence of mouse satellite DNA.
    Nucleic Acids Res. 1981 Feb 11;9(3):683-96 PMID: 6261227
  24. Inserted sequences in bovine satellite DNA's.
    Science. 1981 Jul 24;213(4506):443-5 PMID: 6264600
  25. Sequence specificity of methylation in higher plant DNA.
    Nature. 1981 Aug 27;292(5826):860-2 PMID: 6267477
  26. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  27. A dimer satellite sequence in bonnet monkey DNA consists of distinct monomer subunits.
    J Mol Biol. 1980 Jan 15;136(2):151-67 PMID: 6768891
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/12.16.6415
Published
1984-08-24
Pages
6415-26
Language
English
Region
England
NLM ID
0411011
PMCID
PMC320086
Subset
IM
Databases
GENBANK
X00801
External Links
PubMed source DOI: 10.1093/nar/12.16.6415 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2