Home LiteratureArticle Details
PMID: 6270375 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

den V gene of bacteriophage T4 codes for both pyrimidine dimer-DNA glycosylase and apyrimidinic endonuclease activities.

Journal of virology ·Vol. 40 ·No. 1 ·1981-10-00 ·Pages 211-23

McMillan S, Edenberg HJ, Radany EH, Friedberg RC, Friedberg EC

Abstract

Recent studies have shown purified preparations of phage T4 UV DNA-incising activity (T4 UV endonuclease or endonuclease V of phage T4) contain a pyrimidine dimer-DNA glycosylase activity that catalyzes hydrolysis of the 5' glycosyl bond of dimerized pyrimidines in UV-irradiated DNA. Such enzyme preparations have also been shown to catalyze the hydrolysis of phosphodiester bonds in UV-irradiated DNA at a neutral pH, presumably reflecting the action of an apurinic/apyrimidinic endonuclease at the apyrimidinic sites created by the pyrimidine dimer-DNA glycosylase. In this study we found that preparations of T4 UV DNA-incising activity contained apurinic/apyrimidinic endonuclease activity that nicked depurinated form I simian virus 40 DNA. Apurinic/apyrimidinic endonuclease activity was also found in extracts of Escherichia coli infected with T4 denV+ phage. Extracts of cells infected with T4 denV mutants contained significantly lower levels of apurinic/apyrimidinic endonuclease activity; these levels were no greater than the levels present in extracts of uninfected cells. Furthermore, the addition of DNA containing apurinic or apyrimidinic sites to reactions containing UV-irradiated DNA and T4 enzyme resulted in competition for pyrimidine dimer-DNA glycosylase activity against the UV-irradiated DNA. On the basis of these results, we concluded that apurinic/apyrimidinic endonuclease activity is encoded by the denV gene of phage T4, the same gene that codes for pyrimidine dimer-DNA glycosylase activity.

MeSH Terms
DNA Glycosylases DNA Repair DNA-(Apurinic or Apyrimidinic Site) Lyase Deoxyribonuclease (Pyrimidine Dimer) Deoxyribonuclease IV (Phage T4-Induced) Deoxyribonucleases/genetics Endonucleases/genetics Escherichia coli Proteins Genes Genes, Viral N-Glycosyl Hydrolases/genetics Substrate Specificity T-Phages/enzymology,genetics
Chemicals
Escherichia coli Proteins Deoxyribonucleases Endonucleases Deoxyribonuclease IV (Phage T4-Induced) endonuclease IV, E coli Deoxyribonuclease (Pyrimidine Dimer) DNA Glycosylases N-Glycosyl Hydrolases DNA-(Apurinic or Apyrimidinic Site) Lyase
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
McMillan S
Edenberg H J
Radany E H
Friedberg R C
Friedberg E C
References (40)
40 references, click to expand
  1. A pyrimidine dimer-DNA glycosylase activity associated with the v gene product of bacterophage T4.
    Nature. 1980 Jul 10;286(5769):182-5 PMID: 6250044
  2. Incision of ultraviolet-irradiated DNA by extracts of E. coli requires three different gene products.
    Nature. 1976 Oct 7;263(5577):524-6 PMID: 787804
  3. Comparison of the cleavage of pyrimidine dimers by the bacteriophage T4 and Micrococcus luteus UV-specific endonucleases.
    J Biol Chem. 1980 Dec 25;255(24):12047-50 PMID: 6254991
  4. DNA glycosylases, endonucleases for apurinic/apyrimidinic sites, and base excision-repair.
    Prog Nucleic Acid Res Mol Biol. 1979;22:135-92 PMID: 392601
  5. T4 endonuclease involved in repair of DNA.
    Proc Natl Acad Sci U S A. 1970 Dec;67(4):1839-45 PMID: 5275382
  6. Selective extraction of polyoma DNA from infected mouse cell cultures.
    J Mol Biol. 1967 Jun 14;26(2):365-9 PMID: 4291934
  7. Genetic mapping of xthA, the structural gene for exonuclease III in Escherichia coli K-12.
    J Bacteriol. 1976 Jun;126(3):1082-8 PMID: 780339
  8. Endonucleolytic cleavage of UV-irradiated DNA controlled by the V+ gene in phage T4.
    Biochem Biophys Res Commun. 1969 Nov 6;37(4):646-51 PMID: 4901156
  9. Mutants of phage T4 with increased sensitivity to ultraviolet.
    Virology. 1963 Jan;19:66-71 PMID: 13952844
  10. The ultraviolet endonuclease of bacteriophage T4. Further characterization.
    J Biol Chem. 1975 Apr 25;250(8):2823-9 PMID: 164454
  11. Enzymes involved in thymine dimer excision in bacteriophage T4-infected Escherichia coli.
    J Mol Biol. 1976 Nov;108(1):99-109 PMID: 794491
  12. Mutations simultaneously affecting endonuclease II and exonuclease III in Escherichia coli.
    Proc Natl Acad Sci U S A. 1975 Feb;72(2):688-92 PMID: 1091930
  13. Repair of UV-endonuclease-susceptible sites in the 7 complementation groups of xeroderma pigmentosum A through G.
    Mutat Res. 1979 Sep;62(2):363-8 PMID: 503100
  14. Studies on temperature-dependent ultraviolet light-sensitive mutants of bacteriophage T4: the structural gene for T4 endonuclease V.
    J Mol Biol. 1976 Mar 25;102(1):15-26 PMID: 1271461
  15. Further purification and characterization of T4 endonuclease V.
    Biochim Biophys Acta. 1976 Aug 18;442(2):197-207 PMID: 182258
  16. The genome of bacteriophage T4.
    Bacteriol Rev. 1976 Dec;40(4):847-68 PMID: 795415
  17. Substrate-specificity of uvr excision repair.
    Environ Mutagen. 1979;1(4):347-52 PMID: 233362
  18. Evidence that the UV endonuclease activity induced by bacteriophage T4 contains both pyrimidine dimer-DNA glycosylase and apyrimidinic/apurinic endonuclease activities in the enzyme molecule.
    J Virol. 1981 Oct;40(1):204-10 PMID: 6270374
  19. den V gene of bacteriophage T4 determines a DNA glycosylase specific for pyrimidine dimers in DNA.
    J Virol. 1980 Sep;35(3):790-6 PMID: 6252338
  20. Dark repair of ultraviolet-irradiated deoxyribonucleic acid by bacteriophage T4: purification and characterization of a dimer-specific phage-induced endonuclease.
    J Bacteriol. 1971 May;106(2):500-7 PMID: 4929862
  21. A new endonuclease from Escherichia coli acting at apurinic sites in DNA.
    J Biol Chem. 1977 May 10;252(9):2808-14 PMID: 16002
  22. Purification of Escherichia coli endonuclease specific for apurinic sites in DNA.
    J Biol Chem. 1975 Oct 25;250(20):8214-9 PMID: 1100631
  23. Reactivation of Irradiated Bacteriophage by Transfer of Self-Reproducing Units.
    Proc Natl Acad Sci U S A. 1947 Sep;33(9):253-64 PMID: 16588748
  24. Excision of thymine dimers by proteolytic and amber fragments of E. coli DNA polymerase I.
    Biochem Biophys Res Commun. 1974 May 7;58(1):132-9 PMID: 4598440
  25. An N-glycosidase from Escherichia coli that releases free uracil from DNA containing deaminated cytosine residues.
    Proc Natl Acad Sci U S A. 1974 Sep;71(9):3649-53 PMID: 4610583
  26. Endonuclease II of Escherichia coli is exonuclease III.
    J Biol Chem. 1976 Apr 10;251(7):1896-901 PMID: 773929
  27. DNA N-glycosidases: properties of uracil-DNA glycosidase from Escherichia coli.
    J Biol Chem. 1977 May 25;252(10):3286-94 PMID: 324994
  28. Cleavage of pyrimidine dimers in specific DNA sequences by a pyrimidine dimer DNA-glycosylase of M. luteus.
    Nature. 1980 Jun 26;285(5767):634-41 PMID: 6248789
  29. Letter: Evidence for clustering of pyrimidine dimers on opposite strands of U.V.-irradiated bacteriophage DNA.
    Int J Radiat Biol Relat Stud Phys Chem Med. 1974 Jul;26(1):81-5 PMID: 4547448
  30. DNA repair of ultraviolet-irradiated bacteriophage T4.
    Photochem Photobiol. 1975 Apr;21(4):277-89 PMID: 1108058
  31. POLYDEOXYADENYLIC ACID.
    Proc Natl Acad Sci U S A. 1964 May;51:853-9 PMID: 14173002
  32. DNA N-glycosylases and UV repair.
    Nature. 1980 Sep 18;287(5779):203-8 PMID: 6253795
  33. N-Glycosidase activity in extracts of Bacillus subtilis and its inhibition after infection with bacteriophage PBS2.
    J Virol. 1975 Aug;16(2):315-21 PMID: 807745
  34. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  35. Purification and properties of a pyrimidine dimer-specific endonuclease from E. coli infected with bacteriophage T4.
    Methods Enzymol. 1980;65(1):191-201 PMID: 6246342
  36. Electron microscopic studies on substrate specificity of T4 excision repair endonuclease.
    Nature. 1972 May 12;237(5350):99-100 PMID: 4337868
  37. Methyl methane sulfonate-sensitive mutant of Escherichia coli deficient in an endonuclease specific for apurinic sites in deoxyribonucleic acid.
    J Bacteriol. 1976 May;126(2):646-53 PMID: 177402
  38. Molecular mechanisms of pyrimidine dimer excision in Saccharomyces cerevisiae: incision of ultraviolet-irradiated deoxyribonucleic acid in vivo.
    J Bacteriol. 1981 May;146(2):692-704 PMID: 7012136
  39. Nucleotide excision repair of damaged DNA.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 2:947-55 PMID: 290451
  40. Purification and properties of the human placental apurinic/apyrimidinic endonuclease.
    Methods Enzymol. 1980;65(1):216-24 PMID: 6246345
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1981-10-00
Pages
211-23
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC256611
Subset
IM
Grants
NIGMS NIH HHS · GM 25681 · United States
NIGMS NIH HHS · GM07365 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]