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PMID: 6287231 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Construction, replication, and chromatin structure of TRP1 RI circle, a multiple-copy synthetic plasmid derived from Saccharomyces cerevisiae chromosomal DNA.

Molecular and cellular biology ·Vol. 2 ·No. 3 ·1982-03-00 ·Pages 221-32

Zakian VA, Scott JF

Abstract

Transformation studies with Saccharomyces cerevisiae (bakers' yeast) have identified DNA sequences which permit extrachromosomal maintenance of recombinant DNA plasmids in transformed cells. It has been hypothesized that such sequences (called ARS for autonomously replicating sequence) serve as initiation sites for DNA replication in recombinant DNA plasmids and that they represent the normal sites for initiation of replication in yeast chromosomal DNA. We have constructed a novel plasmid called TRP1 R1 Circle which consists solely of 1,453 base pairs of yeast chromosomal DNA. TRP1 RI Circle contains both the TRP1 gene and a sequence called ARS1. This plasmid is found in 100 to 200 copies per cell and is relatively stable during both mitotic and meiotic cell cycles. Replication of TRP1 RI Circle requires the products of the same genes (CDC28, CDC4, CDC7, and CDC8) required for replication of chromosomaL DNA. Like chromosomal DNA, its replication does not occur in cells arrested in the B1 phase of the cell cycle by incubation with the yeast pheromone alpha-factor. In addition, TRP1 RI Circle DNA is organized into nucleosomes whose size and spacing are indistinguishable from that of bulk yeast chromatin. These results indicate that TRP1 RI Circle has the replicative and structural properties expected for an origin of replication from yeast chromosomal DNA. Thus, this plasmid is a suitable model for further studies of yeast DNA replication in both cells and cell-free extracts.

MeSH Terms
Base Sequence Chromatin/analysis Chromosomes Cloning, Molecular DNA Restriction Enzymes DNA, Circular/analysis,biosynthesis DNA, Recombinant Meiosis Mitosis Plasmids Saccharomyces cerevisiae/genetics Transformation, Genetic
Chemicals
Chromatin DNA, Circular DNA, Recombinant DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Zakian V A
Scott J F
References (41)
41 references, click to expand
  1. Circular DNA forms of colicinogenic factors E1, E2 and E3 from Escherichia coli.
    J Mol Biol. 1968 Sep 14;36(2):185-94 PMID: 4939624
  2. Reversible arrest of haploid yeast cells in the initiation of DNA synthesis by a diffusible sex factor.
    Exp Cell Res. 1973 Jan;76(1):99-110 PMID: 4566314
  3. Stimulation by cyclic adenosine monophosphate of plasmid deoxyribonucleic acid replication and catabolite repression of the plasmid deoxyribonucleic acid-protein relaxation complex.
    J Bacteriol. 1973 May;114(2):577-91 PMID: 4350343
  4. Purification and partial characterization of -factor, a mating-type specific inhibitor of cell reproduction from Saccharomyces cerevisiae.
    Eur J Biochem. 1973 Jun;35(2):357-65 PMID: 4577857
  5. Three additional genes required for deoxyribonucleic acid synthesis in Saccharomyces cerevisiae.
    J Bacteriol. 1973 Sep;115(3):966-74 PMID: 4580573
  6. Mitochondrial deoxyribonucleic acid synthesis in a temperature-sensitive mutant of deoxyribonucleic acid replication of Saccharomyces cerevisiae.
    Biochemistry. 1973 Oct 23;12(22):4374-8 PMID: 4584325
  7. Preferential synthesis of yeast mitochondrial DNA in alpha factor-arrested cells.
    Biochem Biophys Res Commun. 1973 Dec 10;55(3):603-9 PMID: 4586613
  8. Localization and quantification of circular DNA in yeast.
    Eur J Biochem. 1974 Jan 16;41(2):359-65 PMID: 4593580
  9. Studies on nuclear and mitochondrial DNA of Saccharomyces cerevisiae.
    Cold Spring Harb Symp Quant Biol. 1974;38:17-29 PMID: 4598636
  10. Yeast chromatin subunit structure.
    Science. 1975 Apr 11;188(4184):165-6 PMID: 1090006
  11. Replicating circular DNA molecules in yeast.
    Cell. 1975 Mar;4(3):249-53 PMID: 1091361
  12. Sequential gene function in the initiation of Saccharomyces cerevisiae DNA synthesis.
    J Mol Biol. 1974 Apr 15;84(3):445-61 PMID: 4618856
  13. Mitochondrial DNA synthesis in cell cycle mutants of Saccharomyces cerevisiae.
    Cell. 1975 Aug;5(4):423-8 PMID: 1098780
  14. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  15. Sequential function of gene products relative to DNA synthesis in the yeast cell cycle.
    J Mol Biol. 1976 Jul 15;104(4):803-17 PMID: 785015
  16. Thymidine 5'-monophosphate-requiring mutants of Saccharomyces cerevisiae are deficient in thymidylate synthetase.
    J Bacteriol. 1977 Oct;132(1):44-50 PMID: 334734
  17. Control of Saccharomyces cerevisiae 2microN DNA replication by cell division cycle genes that control nuclear DNA replication.
    J Mol Biol. 1977 Oct 25;116(2):249-60 PMID: 340697
  18. Transformation of yeast.
    Proc Natl Acad Sci U S A. 1978 Apr;75(4):1929-33 PMID: 347451
  19. Transformation of yeast by a replicating hybrid plasmid.
    Nature. 1978 Sep 14;275(5676):104-9 PMID: 357984
  20. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules.
    Proc Natl Acad Sci U S A. 1979 Mar;76(3):1035-9 PMID: 375221
  21. Replication of each copy of the yeast 2 micron DNA plasmid occurs during the S phase.
    Cell. 1979 Aug;17(4):923-34 PMID: 385147
  22. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683-7 PMID: 291033
  23. Isolation of a condensed, intracellular form of the 2-micrometer DNA plasmid of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3727-31 PMID: 386345
  24. High-frequency transformation of yeast by plasmids containing the cloned yeast ARG4 gene.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3829-33 PMID: 386351
  25. Isolation and characterisation of a yeast chromosomal replicator.
    Nature. 1979 Nov 1;282(5734):39-43 PMID: 388229
  26. Replacement of chromosome segments with altered DNA sequences constructed in vitro.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):4951-5 PMID: 388424
  27. Characterization of a histone-like protein extracted from yeast mitochondria.
    Proc Natl Acad Sci U S A. 1979 Sep;76(9):4265-9 PMID: 228293
  28. Replication in Saccharomyces cerevisiae of plasmid pBR313 carrying DNA from the yeast trpl region.
    Gene. 1979 Oct;7(2):141-52 PMID: 389741
  29. Isolation of chromosomal origins of replication in yeast.
    Nature. 1980 Mar 13;284(5752):185-7 PMID: 6987527
  30. Cell cycle phase expansion in nitrogen-limited cultures of Saccharomyces cerevisiae.
    J Cell Biol. 1980 Apr;85(1):96-107 PMID: 6988443
  31. Detection of specific RNAs or specific fragments of DNA by fractionation in gels and transfer to diazobenzyloxymethyl paper.
    Methods Enzymol. 1979;68:220-42 PMID: 94421
  32. Sequence of a yeast DNA fragment containing a chromosomal replicator and the TRP1 gene.
    Gene. 1980 Jul;10(2):157-66 PMID: 6248420
  33. Replication and recombination functions associated with the yeast plasmid, 2 mu circle.
    Cell. 1980 Sep;21(2):501-8 PMID: 7407923
  34. Nucleotide sequence of the yeast plasmid.
    Nature. 1980 Aug 28;286(5776):860-5 PMID: 6251374
  35. Isolation of a yeast centromere and construction of functional small circular chromosomes.
    Nature. 1980 Oct 9;287(5782):504-9 PMID: 6999364
  36. DNA-protein interactions in the Drosophila melanogaster mitochondrial genome as deduced from trimethylpsoralen crosslinking patterns.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):4118-22 PMID: 6776522
  37. Virus-like particles of yeast.
    Annu Rev Microbiol. 1980;34:49-68 PMID: 7002031
  38. Saccharomyces cerevisiae plasmid, Scp or 2 mum: intracellular distribution, stability and nucleosomal-like packaging.
    Nucleic Acids Res. 1980 Aug 11;8(15):3371-91 PMID: 6255414
  39. Autonomously replicating sequences in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1980 Nov;77(11):6329-33 PMID: 7005897
  40. Origin of replication from Xenopus laevis mitochondrial DNA promotes high-frequency transformation of yeast.
    Proc Natl Acad Sci U S A. 1981 May;78(5):3128-32 PMID: 7019920
  41. Yeast L double-stranded ribonucleic acid is synthesized during the G1 phase but not the S phase of the cell cycle.
    Mol Cell Biol. 1981 Aug;1(8):673-9 PMID: 9279380
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1982-03-00
Pages
221-32
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC369780
Subset
IM
Grants
NIGMS NIH HHS · GM26938 · United States
NIGMS NIH HHS · GM27000 · United States
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