Home LiteratureArticle Details
PMID: 6296794 Published · ppublish English Comparative Study Journal Article

Independently evolving chicken histone H2B genes: identification of a ubiquitous H2B-specific 5' element.

Nucleic acids research ·Vol. 10 ·No. 23 ·1982-12-11 ·Pages 7851-63

Harvey RP, Robins AJ, Wells JR

Abstract

The DNA sequence of two chicken histone H2B genes has been determined. Both genes code for the same H2B subtype. Except for conserved "promoter" elements, the sequences 5' to the protein coding regions are completely divergent, indicating that the genes are distantly related and are not evolving in concert. This presents an ideal situation for sequence comparisons. We have discovered a 13 bp, H2B specific homology block, 5' CTCATTTGCATAC 3' located close to the "TATA box". This motif is conserved in all H2B gene leader regions so far sequenced. One of the H2B genes is closely linked, in a divergent arrangement, to an H2A gene, and sequence data suggests that the linked genes share promoter elements.

MeSH Terms
Amino Acid Sequence Animals Base Sequence Biological Evolution Chickens DNA Restriction Enzymes Genes Histones/genetics Sea Urchins Species Specificity Xenopus
Chemicals
Histones DNA Restriction Enzymes
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Harvey R P
Robins A J
Wells J R
References (25)
25 references, click to expand
  1. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  2. Histone H2B variants from the erythrocytes of an amphibian, a reptile and a bird.
    Biochim Biophys Acta. 1978 Mar 28;533(1):278-81 PMID: 638193
  3. The organization of the histone genes in Drosophila melanogaster: functional and evolutionary implications.
    Cold Spring Harb Symp Quant Biol. 1978;42 Pt 2:1047-51 PMID: 98262
  4. The DNA sequence of sea urchin (S. purpuratus) H2A, H2B and H3 histone coding and spacer regions.
    Cell. 1978 Nov;15(3):1033-44 PMID: 728984
  5. Inhibition of a nuclease contaminant in the commercial preparations of Escherichia coli alkaline phosphatase.
    Anal Biochem. 1979 Jun;95(2):458-64 PMID: 378024
  6. More histone structures.
    FEBS Lett. 1979 Apr 15;100(2):201-18 PMID: 378692
  7. Histone genes and histone messengers.
    Annu Rev Biochem. 1979;48:837-70 PMID: 112914
  8. Isolation and characterization of the histone variants in chicken erythrocytes.
    Biochemistry. 1979 Sep 4;18(18):3952-60 PMID: 486404
  9. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  10. Sea urchin histone mRNA termini are located in gene regions downstream from putative regulatory sequences.
    Nature. 1980 May 15;285(5761):147-51 PMID: 7374764
  11. The structure and evolution of the human beta-globin gene family.
    Cell. 1980 Oct;21(3):653-68 PMID: 6985477
  12. Ubiquitous and gene-specific regulatory 5' sequences in a sea urchin histone DNA clone coding for histone protein variants.
    Nucleic Acids Res. 1980 Mar 11;8(5):957-77 PMID: 7443547
  13. Structure, organization and evolution of developmentally regulated chorion genes in a silkmoth.
    Cell. 1980 Dec;22(3):855-67 PMID: 7460015
  14. Spacer DNA sequences upstream of the T-A-T-A-A-A-T-A sequence are essential for promotion of H2A histone gene transcription in vivo.
    Proc Natl Acad Sci U S A. 1980 Dec;77(12):7102-6 PMID: 6938957
  15. Termination of transcription and its regulation in the tryptophan operon of E. coli.
    Cell. 1981 Apr;24(1):10-23 PMID: 7016334
  16. DNase I hypersensitive sites in Drosophila chromatin occur at the 5' ends of regions of transcription.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):143-6 PMID: 6264428
  17. Gene conversion: some implications for immunoglobulin genes.
    Cell. 1981 Jun;24(3):592-4 PMID: 7018693
  18. The structure of the human histone genes: clustered but not tandemly repeated.
    Cell. 1981 Jun;24(3):661-8 PMID: 6265100
  19. Vertebrate histone genes: nucleotide sequence of a chicken H2A gene and regulatory flanking sequences.
    Nucleic Acids Res. 1981 Jul 10;9(13):3119-28 PMID: 6269072
  20. The organization and expression of histone gene families.
    Cell. 1981 Aug;25(2):301-13 PMID: 6793234
  21. Analysis of transcriptional regulatory signals of the HSV thymidine kinase gene: identification of an upstream control region.
    Cell. 1981 Aug;25(2):385-98 PMID: 6269744
  22. A chicken histone H3 gene contains intervening sequences.
    Nature. 1982 Jun 3;297(5865):434-6 PMID: 7078654
  23. The DNA sequence of the 5' flanking region of the human beta-globin gene: evolutionary conservation and polymorphic differences.
    Nucleic Acids Res. 1982 Mar 25;10(6):2109-20 PMID: 6985483
  24. Delimitation of far upstream sequences required for maximal in vitro transcription of an H2A histone gene.
    Proc Natl Acad Sci U S A. 1982 Jan;79(2):297-301 PMID: 6952185
  25. Generation of authentic 3' termini of an H2A mRNA in vivo is dependent on a short inverted DNA repeat and on spacer sequences.
    Cell. 1982 Apr;28(4):739-45 PMID: 6284372
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1982-12-11
Pages
7851-63
Language
English
Region
England
NLM ID
0411011
PMCID
PMC327051
Subset
IM
Databases
GENBANK
J00864, J00865
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]