Home LiteratureArticle Details
PMID: 6320126 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Structure of the chloroplast gene for the precursor of the Mr 32,000 photosystem II protein from mustard (Sinapis alba L.).

Nucleic acids research ·Vol. 12 ·No. 2 ·1984-01-25 ·Pages 945-58

Link G, Langridge U

Abstract

The nucleotide sequence of the mustard chloroplast gene for the precursor of the Mr 32,000 photosystem II protein is presented. A comparison with the corresponding genes from spinach and Nicotiana debneyi (14) reveals less than 5% nucleotide divergence in the coding region. The derived protein of mustard differs from the corresponding proteins by three amino acid positions at the C-terminus. We have defined the presumed transcription start and termination sites of the mustard gene. Upstream from the start site are sequences typical of a prokaryotic promoter and, also, a sequence that resembles the eukaryotic 'TATA' box. A search for intrastrand base pairing revealed stem-loop secondary structure at the transcription start and termination sites and in the region preceding the presumed promoter. This latter region is a 69-base-pair sequence element unique to the 5'flanking sequence of the mustard gene.

MeSH Terms
Base Sequence Chloroplasts/metabolism DNA Restriction Enzymes Genes Molecular Weight Mustard Plant/metabolism Nucleic Acid Conformation Photosynthesis Photosynthetic Reaction Center Complex Proteins Photosystem II Protein Complex Plant Proteins/genetics Plants/metabolism Plants, Medicinal Plants, Toxic Protein Precursors/genetics Species Specificity Tobacco/metabolism Transcription, Genetic
Chemicals
Photosynthetic Reaction Center Complex Proteins Photosystem II Protein Complex Plant Proteins Protein Precursors DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Link G
Langridge U
References (30)
30 references, click to expand
  1. Regulatory sequences involved in the promotion and termination of RNA transcription.
    Annu Rev Genet. 1979;13:319-53 PMID: 94251
  2. Vasodilator response in the lower extremity induced by contrast medium. I Canine model.
    Acta Radiol Diagn (Stockh). 1982;23(2):81-6 PMID: 7090855
  3. Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids.
    Cell. 1977 Nov;12(3):721-32 PMID: 922889
  4. Protein synthesis in chloroplasts. VIII. Differential synthesis of chloroplast proteins during spinach leaf development.
    Biochim Biophys Acta. 1980 Apr 30;607(2):319-30 PMID: 6154482
  5. Spinach chloroplast mRNA for a 32 000 dalton polypeptide: size and localization on the physical map of the chloroplast DNA.
    Biochim Biophys Acta. 1980 Dec 11;610(2):297-310 PMID: 7213628
  6. A control region in the center of the 5S RNA gene directs specific initiation of transcription: I. The 5' border of the region.
    Cell. 1980 Jan;19(1):13-25 PMID: 7357599
  7. A flexible new computer program for handling DNA sequence data.
    Nucleic Acids Res. 1982 Jan 11;10(1):229-36 PMID: 6278406
  8. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  9. Fractionation of low molecular weight DNA or RNA in polyacrylamide gels containing 98% formamide or 7 M urea.
    Methods Enzymol. 1980;65(1):299-305 PMID: 6154865
  10. A rapid boiling method for the preparation of bacterial plasmids.
    Anal Biochem. 1981 Jun;114(1):193-7 PMID: 6269464
  11. The use of thin acrylamide gels for DNA sequencing.
    FEBS Lett. 1978 Mar 1;87(1):107-10 PMID: 631324
  12. Characterization of the 32,000 Dalton Chloroplast Membrane Protein: III. Probing Its Biological Function in Spirodela.
    Plant Physiol. 1979 Nov;64(5):828-32 PMID: 16661063
  13. Nucleotide sequence of the gene for the M(r) 32,000 thylakoid membrane protein from Spinacia oleracea and Nicotiana debneyi predicts a totally conserved primary translation product of M(r) 38,950.
    Proc Natl Acad Sci U S A. 1982 Dec;79(24):7699-703 PMID: 16593262
  14. Mapping of RNA by a modification of the Berk-Sharp procedure: the 5' termini of 15 S beta-globin mRNA precursor and mature 10 s beta-globin mRNA have identical map coordinates.
    Nucleic Acids Res. 1979 Nov 10;7(5):1175-93 PMID: 390497
  15. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  16. Processing of a chloroplast-translated membrane protein in vivo. Analysis of the rapidly synthesized 32 000-dalton shield protein and its precursor in Spirodela oligorrhiza.
    Eur J Biochem. 1982 May;124(1):125-9 PMID: 7084221
  17. Membrane proteins synthesized but not processed by isolated maize chloroplasts.
    J Cell Biol. 1978 Sep;78(3):734-46 PMID: 701358
  18. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  19. The complete nucleotide sequence of 16S ribosomal RNA gene from tobacco chloroplasts.
    Gene. 1982 Feb;17(2):213-8 PMID: 7044901
  20. Compilation and analysis of Escherichia coli promoter DNA sequences.
    Nucleic Acids Res. 1983 Apr 25;11(8):2237-55 PMID: 6344016
  21. Novel evolutionary variation in transcription and location of two chloroplast genes.
    Nucleic Acids Res. 1982 Nov 11;10(21):6819-32 PMID: 6757868
  22. Cloning and mapping of the chloroplast DNA sequences for two messenger RNAs from mustard (Sinapis alba L.).
    Nucleic Acids Res. 1981 Aug 11;9(15):3681-94 PMID: 6269088
  23. Improvements of DNA sequencing gels.
    Anal Biochem. 1981 Aug;115(2):450-7 PMID: 7304971
  24. Characterization of the gene and messenger RNA of the large subunit of ribulose 1,5-diphosphate carboxylase in Chlamydomonas reinhardii.
    J Mol Biol. 1979 Sep 25;133(3):417-34 PMID: 537056
  25. Identification of the triazine receptor protein as a chloroplast gene product.
    Proc Natl Acad Sci U S A. 1981 Dec;78(12):7463-7 PMID: 16593133
  26. The rapidly metabolized 32,000-dalton polypeptide of the chloroplast is the "proteinaceous shield" regulating photosystem II electron transport and mediating diuron herbicide sensitivity.
    Proc Natl Acad Sci U S A. 1981 Mar;78(3):1572-6 PMID: 6940173
  27. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  28. Maize plastid gene expressed during photoregulated development.
    Proc Natl Acad Sci U S A. 1978 Jul;75(7):3060-4 PMID: 16592541
  29. Organization and expression of eucaryotic split genes coding for proteins.
    Annu Rev Biochem. 1981;50:349-83 PMID: 6791577
  30. General occurrence and structural similarity of the rapidly synthesized, 32,000-dalton protein of the chloroplast membrane.
    J Biol Chem. 1982 Apr 25;257(8):4583-7 PMID: 7068652
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1984-01-25
Pages
945-58
Language
English
Region
England
NLM ID
0411011
PMCID
PMC318547
Subset
IM
Databases
GENBANK
X00340
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]