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PMID: 6330676 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Sequences of the E. coli uvrC gene and protein.

Nucleic acids research ·Vol. 12 ·No. 11 ·1984-06-11 ·Pages 4593-608

Sancar GB, Sancar A, Rupp WD

Abstract

We have determined the sequence of a 2400 bp region of E. coli chromosomal DNA containing the uvrC gene. The coding region of uvrc is 2267 bp in length, encodes a polypeptide with a calculated molecular weight of 66,038 daltons, and is preceded by a typical E. coli ribosome binding site. By constructing deletion derivatives we have established that a uvrC promoter lies within the 113 bp region preceding the translational start of uvrC. The codon usage in uvrC is strongly biased in favor of codons used infrequently in E. coli, which may contribute to the relatively low intracellular concentration of uvrC protein.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/genetics Base Composition Base Sequence Codon/genetics DNA Restriction Enzymes Escherichia coli/genetics,radiation effects Genes Genes, Bacterial Molecular Weight Operon Plasmids Protein Biosynthesis Ultraviolet Rays
Chemicals
Bacterial Proteins Codon DNA Restriction Enzymes
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Sancar G B
Sancar A
Rupp W D
References (41)
41 references, click to expand
  1. Three loci in Escherichia coli K-12 that control the excision of pyrimidine dimers and certain other mutagen products from DNA.
    Genetics. 1966 Jun;53(6):1119-36 PMID: 5335128
  2. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.
    Proc Natl Acad Sci U S A. 1974 Apr;71(4):1342-6 PMID: 4598299
  3. SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis.
    Basic Life Sci. 1975;5A:355-67 PMID: 1103845
  4. Terminal labeling and addition of homopolymer tracts to duplex DNA fragments by terminal deoxynucleotidyl transferase.
    Nucleic Acids Res. 1976 Apr;3(4):863-77 PMID: 775445
  5. Incision of ultraviolet-irradiated DNA by extracts of E. coli requires three different gene products.
    Nature. 1976 Oct 7;263(5577):524-6 PMID: 787804
  6. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome.
    Cell. 1976 Sep;9(1):91-9 PMID: 788919
  7. Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels.
    J Mol Biol. 1977 Feb 15;110(1):119-46 PMID: 845942
  8. The use of thin acrylamide gels for DNA sequencing.
    FEBS Lett. 1978 Mar 1;87(1):107-10 PMID: 631324
  9. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  10. Regulatory sequences involved in the promotion and termination of RNA transcription.
    Annu Rev Genet. 1979;13:319-53 PMID: 94251
  11. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  12. E. coli RNA polymerase interacts homologously with two different promoters.
    Cell. 1980 Jun;20(2):269-81 PMID: 6248238
  13. Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325.
    Gene. 1980 May;9(3-4):287-305 PMID: 6248430
  14. Cleavage of the Escherichia coli lexA protein by the recA protease.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3225-9 PMID: 6447873
  15. Impaired incision of ultraviolet-irradiated deoxyribonucleic acid in uvrC mutants of Escherichia coli.
    J Bacteriol. 1980 Oct;144(1):97-104 PMID: 6998973
  16. Nucleotide sequence of the gene ompA coding the outer membrane protein II of Escherichia coli K-12.
    Nucleic Acids Res. 1980 Jul 11;8(13):3011-27 PMID: 6253901
  17. Evidence for the inducibility of the uvrB operon.
    Nature. 1981 Jan 15;289(5794):196-8 PMID: 7005695
  18. Expression of the E. coli uvrA gene is inducible.
    Nature. 1981 Feb 26;289(5800):808-10 PMID: 6780917
  19. Identification of E. coli uvrC protein.
    Nature. 1981 Jul 9;292(5819):171-3 PMID: 6264323
  20. Cloning of genes involved in membrane lipid synthesis: effects of amplification of phosphatidylglycerophosphate synthase in Escherichia coli.
    J Bacteriol. 1981 Aug;147(2):552-62 PMID: 6267013
  21. The plasmid cloning vector pBR325 contains a 482 base-pair-long inverted duplication.
    Gene. 1981 Sep;14(4):289-99 PMID: 6271628
  22. Identification of the uvrC gene product.
    Proc Natl Acad Sci U S A. 1981 Sep;78(9):5450-4 PMID: 7029536
  23. Identification of the uvrA gene product.
    J Mol Biol. 1981 May 5;148(1):45-62 PMID: 6273577
  24. Identification of the uvrB gene product.
    J Mol Biol. 1981 May 5;148(1):63-76 PMID: 6273578
  25. Cloning of the uvrC gene of Escherichia coli: expression of a DNA repair gene.
    Proc Natl Acad Sci U S A. 1981 Oct;78(10):6033-7 PMID: 6273841
  26. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system.
    J Mol Biol. 1981 Sep 25;151(3):389-409 PMID: 6175758
  27. The uvrB gene of Escherichia coli has both lexA-repressed and lexA-independent promoters.
    Cell. 1982 Mar;28(3):523-30 PMID: 6280873
  28. LexA protein inhibits transcription of the E. coli uvrA gene in vitro.
    Nature. 1982 Jul 1;298(5869):96-8 PMID: 6283374
  29. The SOS regulatory system of Escherichia coli.
    Cell. 1982 May;29(1):11-22 PMID: 7049397
  30. uvr Genes function differently in repair of acetylaminofluorene and aminofluorene DNA adducts.
    Nature. 1982 Oct 14;299(5884):646-8 PMID: 6750414
  31. Molecular structure of uvrC gene of Escherichia coli: identification of DNA sequences required for transcription of the uvrC gene.
    Nucleic Acids Res. 1982 Sep 11;10(17):5209-21 PMID: 6292835
  32. Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli.
    Proc Natl Acad Sci U S A. 1983 Feb;80(3):687-91 PMID: 6338495
  33. Compilation and analysis of Escherichia coli promoter DNA sequences.
    Nucleic Acids Res. 1983 Apr 25;11(8):2237-55 PMID: 6344016
  34. Studies on transformation of Escherichia coli with plasmids.
    J Mol Biol. 1983 Jun 5;166(4):557-80 PMID: 6345791
  35. In vivo transcription of the E. coli uvrB gene: both promoters are inducible by UV.
    Nucleic Acids Res. 1983 Jul 11;11(13):4355-63 PMID: 6306586
  36. In vivo regulation of the uvrA gene: role of the "-10" and "-35" promoter regions.
    Nucleic Acids Res. 1983 Sep 10;11(17):5795-810 PMID: 6310514
  37. Essential structure of E. coli promoter: effect of spacer length between the two consensus sequences on promoter function.
    Nucleic Acids Res. 1983 Sep 10;11(17):5855-64 PMID: 6310517
  38. Transcription of the sulA gene and repression by LexA.
    J Mol Biol. 1983 Dec 15;171(3):337-43 PMID: 6317868
  39. Regulation of the uvrC gene of Escherichia coli K12: localization and characterization of a damage-inducible promoter.
    EMBO J. 1983;2(12):2313-8 PMID: 6321159
  40. Transcription of the uvrD gene of Escherichia coli is controlled by the lexA repressor and by attenuation.
    Nucleic Acids Res. 1983 Dec 20;11(24):8625-40 PMID: 6324092
  41. A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region.
    Cell. 1983 May;33(1):249-60 PMID: 6380755
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1984-06-11
Pages
4593-608
Language
English
Region
England
NLM ID
0411011
PMCID
PMC318860
Subset
IM
Grants
NCI NIH HHS · CA06519 · United States
NCI NIH HHS · CA09259 · United States
NIGMS NIH HHS · GM24178 · United States
Databases
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X00189, X00638, X03691
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