Home LiteratureArticle Details
PMID: 6430699 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

The nucleotide sequence of the 16S ribosomal RNA gene of the archaebacterium Halococcus morrhua.

The EMBO journal ·Vol. 3 ·No. 7 ·1984-07-00 ·Pages 1613-9

Leffers H, Garrett RA

Abstract

The sequence of the 16S rRNA gene from the archaebacterium Halococcus morrhua was determined by the dideoxynucleotide sequencing method. It is 1475 nucleotides long. This is the second archaebacterial sequence to be determined and it provides sequence comparison evidence for the secondary structural elements confined to the RNAs of this kingdom and, also, support for controversial or additional base pairing in the eubacterial RNAs. Six structural features are localized that have varied during the evolution of the archaebacteria, eubacteria and eukaryotes. Moreover, although the secondary structures of both sequenced archaebacterial RNAs strongly resemble those of eubacteria, they contain sufficient eukaryotic-like structural characteristics to reinforce the view that they belong to a separate line of evolutionary descent.

MeSH Terms
Archaea/genetics Bacteria/genetics Base Sequence Biological Evolution Genes Genes, Bacterial Hydrogen Bonding Nucleic Acid Conformation RNA, Ribosomal/genetics
Chemicals
RNA, Ribosomal
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Leffers H
Garrett R A
References (24)
24 references, click to expand
  1. Are archaebacteria merely derived 'prokaryotes'?
    Nature. 1981 Jan 1;289(5793):95-6 PMID: 6161309
  2. Sequence of the 16S Ribosomal RNA from Halobacterium volcanii, an Archaebacterium.
    Science. 1983 Aug 12;221(4611):656-9 PMID: 17787735
  3. Nucleotide sequences from specific areas of the 16S and 23S ribosomal RNAs of E. coli.
    Eur J Biochem. 1969 Nov;11(1):12-27 PMID: 4311070
  4. Evolutionary relationship between Halobacterium cutirubrum and eukaryotes determined by use of aminoacyl-tRNA synthetases as phylogenetic probes.
    Can J Biochem. 1980 Mar;58(3):213-8 PMID: 6989454
  5. Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.
    Nucleic Acids Res. 1981 Aug 11;9(15):3621-40 PMID: 7024918
  6. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4801-5 PMID: 368799
  7. The nucleotide sequence of a rat 18 S ribosomal ribonucleic acid gene and a proposal for the secondary structure of 18 S ribosomal ribonucleic acid.
    J Biol Chem. 1984 Jan 10;259(1):224-30 PMID: 6323401
  8. Reactions at the termini of tRNA with T4 RNA ligase.
    Nucleic Acids Res. 1978 Oct;5(10):3665-77 PMID: 724498
  9. Archaebacteria.
    J Mol Evol. 1978 Aug 2;11(3):245-51 PMID: 691075
  10. Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type.
    EMBO J. 1983;2(8):1291-4 PMID: 10872322
  11. Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids.
    Microbiol Rev. 1983 Dec;47(4):621-69 PMID: 6363901
  12. Are extreme halophiles actually "bacteria"?
    J Mol Evol. 1978 May 12;11(1):1-8 PMID: 660662
  13. A system for shotgun DNA sequencing.
    Nucleic Acids Res. 1981 Jan 24;9(2):309-21 PMID: 6259625
  14. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  15. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  16. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  17. The making of strand-specific M13 probes.
    Gene. 1982 Mar;17(3):271-7 PMID: 7049837
  18. Archaebacterial elongation factor is ADP-ribosylated by diphtheria toxin.
    Nature. 1980 Sep 18;287(5779):250-1 PMID: 6776409
  19. A general secondary-structure model for procaryotic and eucaryotic RNAs from the small ribosomal subunits.
    Eur J Biochem. 1981 Dec;120(3):487-95 PMID: 6174326
  20. Sequence homologies in the N-terminal region of the ribosomal 'A' proteins from Methanobacterium Thermoautotrophicum and Halobacterium cutirubrum.
    Biochim Biophys Acta. 1980 Nov 20;626(1):162-9 PMID: 7006702
  21. Secondary structure of the Dictyostelium discoideum small subunit ribosomal RNA.
    Nucleic Acids Res. 1983 Nov 25;11(22):8037-49 PMID: 6359065
  22. Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli.
    Nucleic Acids Res. 1983 Nov 11;11(21):7263-86 PMID: 6359058
  23. An archaebacterial 5S rRNA contains a long insertion sequence.
    Nature. 1981 Oct 29;293(5835):755-6 PMID: 6169998
  24. The 3'-terminal nucleotide sequence of the Halobacterium halobium 16 S rRNA.
    FEBS Lett. 1982 Jul 19;144(1):177-80 PMID: 7106297
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1984-07-00
Pages
1613-9
Language
English
Region
England
NLM ID
8208664
PMCID
PMC557567
Subset
IM
Databases
GENBANK
X00662
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]