Home LiteratureArticle Details
PMID: 6499832 Published · ppublish English Journal Article

Analysis of the distribution of charged residues in the N-terminal region of signal sequences: implications for protein export in prokaryotic and eukaryotic cells.

The EMBO journal ·Vol. 3 ·No. 10 ·1984-10-00 ·Pages 2315-8

von Heijne G

Abstract

A statistical analysis of the distribution of charged residues in the N-terminal region of 39 prokaryotic and 134 eukaryotic signal sequences reveals a remarkable similarity between the two samples, both in terms of net charge and in terms of the position of charged residues within the N-terminal region, and suggests that the formyl group on Metf is not removed in prokaryotic signal sequences.

MeSH Terms
Amino Acid Sequence Animals Biological Transport Cells/metabolism Eukaryotic Cells/metabolism Humans Peptides/analysis Prokaryotic Cells/metabolism Protein Sorting Signals
Chemicals
Peptides Protein Sorting Signals
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
von Heijne G
References (70)
70 references, click to expand
  1. Detailed analysis of the portion of the herpes simplex virus type 1 genome encoding glycoprotein C.
    J Virol. 1983 Feb;45(2):634-47 PMID: 6300426
  2. Sequence relationships between putative T-cell receptor polypeptides and immunoglobulins.
    Nature. 1984 Mar 8-14;308(5955):153-8 PMID: 6546606
  3. The nucleotide sequences defining the signal peptides of the galactose-binding protein and the arabinose-binding protein.
    J Biol Chem. 1983 Sep 25;258(18):10853-5 PMID: 6885805
  4. Cloning and sequencing of the preprotoxin-coding region of the yeast M1 double-stranded RNA.
    EMBO J. 1984 Jan;3(1):107-11 PMID: 6368221
  5. Complete nucleotide sequence of a French bean storage protein gene: Phaseolin.
    Proc Natl Acad Sci U S A. 1983 Apr;80(7):1897-901 PMID: 16593301
  6. The biosynthesis and primary structure of pea seed lectin.
    J Biol Chem. 1983 Aug 10;258(15):9544-9 PMID: 6688253
  7. Complete primary structures of the E beta chain and gene of the mouse major histocompatibility complex.
    Proc Natl Acad Sci U S A. 1983 Sep;80(18):5520-4 PMID: 6310581
  8. Removal of formyl-methionine residue from nascent bacteriophage f2 protein.
    J Mol Biol. 1972 Mar 14;65(1):163-6 PMID: 4553255
  9. DNA sequence coding for an antifreeze protein precursor from winter flounder.
    Proc Natl Acad Sci U S A. 1982 Jan;79(2):335-9 PMID: 6952188
  10. Mechanisms of protein localization.
    Microbiol Rev. 1983 Sep;47(3):313-44 PMID: 6355805
  11. Nucleotide sequence of the cDNA encoding the precursor of the beta subunit of rat lutropin.
    Proc Natl Acad Sci U S A. 1983 Aug;80(15):4649-53 PMID: 6192440
  12. The heavy chain of human B-cell alloantigen HLA-DS has a variable N-terminal region and a constant immunoglobulin-like region.
    Nature. 1983 Oct 27-Nov 2;305(5937):813-5 PMID: 6415485
  13. A human T cell-specific cDNA clone encodes a protein having extensive homology to immunoglobulin chains.
    Nature. 1984 Mar 8-14;308(5955):145-9 PMID: 6336315
  14. Structure of the human immune interferon gene.
    Nature. 1982 Aug 26;298(5877):859-63 PMID: 6180322
  15. Both alpha and beta chains of HLA-DC class II histocompatibility antigens display extensive polymorphism in their amino-terminal domains.
    EMBO J. 1984 Feb;3(2):447-52 PMID: 6585297
  16. Molecular Basis of Herbicide Resistance in Amaranthus hybridus.
    Science. 1983 Dec 23;222(4630):1346-9 PMID: 17773338
  17. Complete nucleotide sequence of the gene for the specific glycoprotein (gp55) of Friend spleen focus-forming virus.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3913-7 PMID: 6306650
  18. Structure and expression of a cloned cDNA for human interleukin-2.
    Nature. 1983 Mar 24-30;302(5906):305-10 PMID: 6403867
  19. Sequence of a cDNA encoding pancreatic preprosomatostatin-22.
    Proc Natl Acad Sci U S A. 1982 Sep;79(17):5152-6 PMID: 6127673
  20. Effects of the complete removal of basic amino acid residues from the signal peptide on secretion of lipoprotein in Escherichia coli.
    J Biol Chem. 1983 Jun 10;258(11):7141-8 PMID: 6343386
  21. Signal sequence mutations disrupt feedback between secretion of an exported protein and its synthesis in E. coli.
    Nature. 1984 Apr 26-May 2;308(5962):863-4 PMID: 6371546
  22. Comparison of the lipoprotein gene among the Enterobacteriaceae. DNA sequence of Erwinia amylovora lipoprotein gene.
    J Biol Chem. 1981 Mar 10;256(5):2194-8 PMID: 6257705
  23. Mechanism of incorporation of cell envelope proteins in Escherichia coli.
    Annu Rev Microbiol. 1982;36:435-65 PMID: 6756294
  24. Translocation of proteins across the endoplasmic reticulum. I. Signal recognition protein (SRP) binds to in-vitro-assembled polysomes synthesizing secretory protein.
    J Cell Biol. 1981 Nov;91(2 Pt 1):545-50 PMID: 7309795
  25. Nucleotide sequence of a light chain gene of the mouse I-A subregion: A beta d.
    Science. 1983 Aug 19;221(4612):750-4 PMID: 6410508
  26. Cholera toxin genes: nucleotide sequence, deletion analysis and vaccine development.
    Nature. 1983 Dec 8-14;306(5943):551-7 PMID: 6646234
  27. Patterns of amino acids near signal-sequence cleavage sites.
    Eur J Biochem. 1983 Jun 1;133(1):17-21 PMID: 6852022
  28. Rat apolipoprotein E mRNA. Cloning and sequencing of double-stranded cDNA.
    J Biol Chem. 1983 Jul 25;258(14):8993-9000 PMID: 6190813
  29. Gene sequence of the lambda receptor, an outer membrane protein of E. coli K12.
    Cell. 1981 Dec;27(3 Pt 2):507-14 PMID: 6086106
  30. Molecular components of the signal sequence that function in the initiation of protein export.
    J Cell Biol. 1982 Dec;95(3):689-96 PMID: 6759512
  31. How signal sequences maintain cleavage specificity.
    J Mol Biol. 1984 Feb 25;173(2):243-51 PMID: 6423828
  32. Transient involvement of signal recognition particle and its receptor in the microsomal membrane prior to protein translocation.
    Cell. 1983 Dec;35(3 Pt 2):677-85 PMID: 6317198
  33. Cloning and sequence analysis of cDNA for ovine corticotropin-releasing factor precursor.
    Nature. 1983 Feb 10;301(5900):537-40 PMID: 6600512
  34. Isolation and sequence analysis of a barley alpha-amylase cDNA clone.
    J Biol Chem. 1983 Jul 10;258(13):8169-74 PMID: 6190808
  35. Membrane-bound penicillinases in Gram-positive bacteria.
    J Biol Chem. 1982 Apr 25;257(8):4490-5 PMID: 6802832
  36. Homology between the primary structure of alpha-fetoprotein, deduced from a complete cDNA sequence, and serum albumin.
    Nature. 1981 May 21;291(5812):201-5 PMID: 6164927
  37. Seminal vesicle secretion IV gene: allelic difference due to a series of 20-base-pair direct tandem repeats within an intron.
    Proc Natl Acad Sci U S A. 1983 Nov;80(21):6460-4 PMID: 6579532
  38. A cDNA sequence encoding a rabbit heavy chain variable region of the VHa2 allotype showing homologies with human heavy chain sequences.
    Nature. 1982 Nov 4;300(5887):74-6 PMID: 6813744
  39. Isolation of two genomic sequences encoding the Mr = 14,000 subunit of rat prostatein.
    J Biol Chem. 1983 Jul 25;258(14):8861-6 PMID: 6190812
  40. Nucleotide sequences of cloned cDNAs for two types of bovine brain substance P precursor.
    Nature. 1983 Nov 3-9;306(5938):32-6 PMID: 6195531
  41. Nucleotide sequence of epidermal growth factor cDNA predicts a 128,000-molecular weight protein precursor.
    Nature. 1983 Jun 23-29;303(5919):722-5 PMID: 6304537
  42. Exon-intron organization and complete nucleotide sequence of a human major histocompatibility antigen DC beta gene.
    Proc Natl Acad Sci U S A. 1983 Dec;80(23):7313-7 PMID: 6316358
  43. Angiotensinogen is related to the antitrypsin-antithrombin-ovalbumin family.
    Science. 1983 Oct 28;222(4622):417-9 PMID: 6604942
  44. Kinetics of maturation of the amino termini of the cell proteins of Escherichia coli.
    Biochim Biophys Acta. 1969 Jan 21;174(1):359-72 PMID: 4885696
  45. Primary structures of N-terminal extra peptide segments linked to the variable and constant regions of immunoglobulin light chain precursors: implications on the organization and controlled expression of immunoglobulin genes.
    Biochemistry. 1978 Jun 13;17(12):2392-400 PMID: 98179
  46. Herpes simplex virus type-1 glycoprotein D gene: nucleotide sequence and expression in Escherichia coli.
    Science. 1982 Oct 22;218(4570):381-4 PMID: 6289440
  47. Complete amino acid sequence of mouse pro-opiomelanocortin derived from the nucleotide sequence of pro-opiomelanocortin cDNA.
    J Biol Chem. 1983 Jan 10;258(1):257-61 PMID: 6129251
  48. Evidence for a coupling of synthesis and export of an outer membrane protein in Escherichia coli.
    EMBO J. 1983;2(1):15-9 PMID: 11894902
  49. Cloning and sequence analysis of a cDNA encoding rat preprocholecystokinin.
    Proc Natl Acad Sci U S A. 1984 Feb;81(3):726-30 PMID: 6199787
  50. A single gene encodes multiple neuropeptides mediating a stereotyped behavior.
    Cell. 1983 Jan;32(1):7-22 PMID: 6687446
  51. Sequence of cDNA encoding human insulin-like growth factor I precursor.
    Nature. 1983 Dec 8-14;306(5943):609-11 PMID: 6358902
  52. Molecular cloning of cDNA for murine interleukin-3.
    Nature. 1984 Jan 19-25;307(5948):233-7 PMID: 6420702
  53. Human preprovasoactive intestinal polypeptide contains a novel PHI-27-like peptide, PHM-27.
    Nature. 1983 Aug 11-17;304(5926):547-9 PMID: 6571696
  54. The receptor for transepithelial transport of IgA and IgM contains multiple immunoglobulin-like domains.
    Nature. 1984 Mar 1-7;308(5954):37-43 PMID: 6322002
  55. Nucleotide and amino acid sequence comparisons of preprosomatostatins.
    J Biol Chem. 1983 Jul 25;258(14):8788-93 PMID: 6134734
  56. Somatic mutation in genes for the variable portion of the immunoglobulin heavy chain.
    Science. 1982 Apr 16;216(4543):309-11 PMID: 6801765
  57. Nucleotide sequence of a cloned structural gene coding for a precursor of pancreatic somatostatin.
    Proc Natl Acad Sci U S A. 1980 Oct;77(10):5869-73 PMID: 6108560
  58. Cloning and expression of human tissue-type plasminogen activator cDNA in E. coli.
    Nature. 1983 Jan 20;301(5897):214-21 PMID: 6337343
  59. An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: VH, D and JH.
    Cell. 1980 Apr;19(4):981-92 PMID: 6769593
  60. Nucleotide sequence and expression of the diphtheria tox228 gene in Escherichia coli.
    Science. 1983 Aug 26;221(4613):855-8 PMID: 6348945
  61. Cloning and sequence analysis of cDNAs encoding two distinct somatostatin precursors found in the endocrine pancreas of anglerfish.
    Nature. 1980 Nov 13;288(5787):137-41 PMID: 6107860
  62. Isolation and analysis of genomic DNA clones encoding the third component of mouse complement.
    Proc Natl Acad Sci U S A. 1982 Dec;79(23):7077-81 PMID: 6985486
  63. Structure and expression of a mouse major histocompatibility antigen gene, H-2Ld.
    Proc Natl Acad Sci U S A. 1982 Mar;79(6):1994-8 PMID: 6952248
  64. A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides.
    J Mol Biol. 1983 Jun 25;167(2):391-409 PMID: 6345794
  65. Cloning and sequence analysis of cDNA for the precursor of human growth hormone-releasing factor, somatocrinin.
    Proc Natl Acad Sci U S A. 1983 Jul;80(14):4311-4 PMID: 6192430
  66. Gene and protein structure of a beta-crystallin polypeptide in murine lens: relationship of exons and structural motifs.
    Nature. 1983 Mar 24-30;302(5906):310-5 PMID: 6835368
  67. Primary structures of bovine liver low molecular weight kininogen precursors and their two mRNAs.
    Proc Natl Acad Sci U S A. 1983 Jan;80(1):90-4 PMID: 6572010
  68. Human leukocyte and fibroblast interferons are structurally related.
    Nature. 1980 Jun 19;285(5766):547-9 PMID: 6157095
  69. The complete nucleotide sequence of the I-E alpha d immune response gene.
    Nucleic Acids Res. 1983 Aug 11;11(15):5055-71 PMID: 6308570
  70. Isolation and characterization of the human apolipoprotein A-I gene.
    Proc Natl Acad Sci U S A. 1983 Oct;80(20):6147-51 PMID: 6413973
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1984-10-00
Pages
2315-8
Language
English
Region
England
NLM ID
8208664
PMCID
PMC557686
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]