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PMID: 7009879 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, Non-P.H.S. Review

Estimating the total number of nucleotide substitutions since the common ancestor of a pair of homologous genes: comparison of several methods and three beta hemoglobin messenger RNA's.

Journal of molecular evolution ·Vol. 16 ·No. 3-4 ·1980-12-00 ·Pages 153-209

Fitch WM

Abstract

暂无摘要

MeSH Terms
Amino Acid Sequence Animals Base Sequence Biological Evolution Codon/analysis Genes Hemoglobins/biosynthesis Humans Mice RNA, Messenger/analysis Rabbits Ribonucleotides/analysis
Chemicals
Codon Hemoglobins RNA, Messenger Ribonucleotides
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Fitch W M
References (55)
55 references, click to expand
  1. Model of effectively neutral mutations in which selective constraint is incorporated.
    Proc Natl Acad Sci U S A. 1979 Jul;76(7):3440-4 PMID: 16592684
  2. [Amino acids sequence. Nucleotide sequence and evolution].
    Bull Soc Chim Biol (Paris). 1967;49(6):577-607 PMID: 4861891
  3. Additive evolutionary trees.
    J Theor Biol. 1977 Jan 21;64(2):199-213 PMID: 839800
  4. Evolutionary trees with minimum nucleotide replacements from amino acid sequences.
    J Mol Evol. 1974;3(4):263-78 PMID: 4413342
  5. Neutral changes during divergent evolution of hemoglobins.
    J Mol Evol. 1978 Aug 2;11(3):267-9 PMID: 691078
  6. Evolutionary rate at the molecular level.
    Nature. 1968 Feb 17;217(5129):624-6 PMID: 5637732
  7. An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.
    Cold Spring Harb Symp Quant Biol. 1966;31:737-48 PMID: 5237213
  8. The REH theory of protein and nucleic acid divergence: a retrospective update.
    J Mol Evol. 1978 Oct 6;11(4):361-74 PMID: 722809
  9. Mutational trends and random processes in the evolution of informational macromolecules.
    J Mol Biol. 1971 Aug 14;59(3):473-90 PMID: 5571595
  10. Codons and nearest-neighbor nucleotide pairs in mammalian messenger RNA.
    J Mol Evol. 1978 Jun 20;11(2):121-7 PMID: 671560
  11. The phylogeny of human globin genes investigated by the maximum parsimony method.
    J Mol Evol. 1974 Feb 28;3(1):1-48 PMID: 4208305
  12. Solution of a gene divergence problem under arbitrary stable nucleotide transition probabilities.
    J Mol Evol. 1976 Dec 30;8(4):337-49 PMID: 1011264
  13. The molecular evolution of cytochrome c in eukaryotes.
    J Mol Evol. 1976 Jun 23;8(1):13-40 PMID: 181584
  14. Higher frequencies of transitions among point mutations.
    J Mol Evol. 1977 Apr 29;9(2):159-80 PMID: 864721
  15. On the stochastic model for estimation of mutational distance between homologous proteins.
    J Mol Evol. 1972 Dec 29;2(1):87-90 PMID: 4668865
  16. Non-Darwinian evolution.
    Science. 1969 May 16;164(3881):788-98 PMID: 5767777
  17. Enzymatic synthesis of deoxyribonucleic acid. XI. Further studies on nearest neighbor base sequences in deoxyribonucleic acids.
    J Biol Chem. 1962 Jun;237:1961-7 PMID: 13918810
  18. An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution.
    Biochem Genet. 1970 Oct;4(5):579-93 PMID: 5489762
  19. Theoretical foundations for a quantitative approach to paleogenetics. Part I: DNA.
    J Mol Evol. 1971;1(1):115-33 PMID: 5173651
  20. The primary structure of rabbit beta-globin mRNA as determined from cloned DNA.
    Cell. 1977 Apr;10(4):571-85 PMID: 558827
  21. The augmentation algorithm and molecular phylogenetic trees.
    J Mol Evol. 1978 Oct 27;12(1):17-24 PMID: 731709
  22. Does the fixation of neutral mutations form a significant part of observed evolution in proteins?
    Brookhaven Symp Biol. 1972;23:186-216 PMID: 4625828
  23. The evolution of the globin family genes: concordance of stochastic and augmented maximum parsimony genetic distances for alpha hemoglobin, beta hemoglobin and myoglobin phylogenies.
    J Mol Biol. 1976 Jul 25;105(1):39-74 PMID: 994186
  24. Stochastic versus augmented maximum parsimony method for estimating superimposed mutations in the divergent evolution of protein sequences. Methods tested on cytochrome c amino acid sequences.
    J Mol Biol. 1976 Jul 25;105(1):15-37 PMID: 186607
  25. The nonidentity of invariable positions in the cytochromes c of different species.
    Biochem Genet. 1971 Jun;5(3):231-41 PMID: 5088800
  26. Theoretical foundations for a quantitative approach to paleogenetics : Part II: Proteins.
    J Mol Evol. 1972 Jun;1(2):134-49 PMID: 24173437
  27. Rat insulin genes: construction of plasmids containing the coding sequences.
    Science. 1977 Jun 17;196(4296):1313-9 PMID: 325648
  28. A method for constructing maximum parsimony ancestral amino acid sequences on a given network.
    J Theor Biol. 1973 Mar;38(3):459-85 PMID: 4734980
  29. Nonrandom amino acid substitution and estimation of the number of nucleotide substitutions in evolution.
    J Mol Evol. 1978 Oct 6;11(4):333-47 PMID: 722807
  30. Protein evolution and the molecular clock.
    Fed Proc. 1976 Aug;35(10):2092-7 PMID: 947789
  31. Use of Chou-Fasman amino acid conformational parameters to analyze the organization of the genetic code and to construct protein genealogies.
    J Mol Evol. 1977 Sep 20;10(1):7-47 PMID: 903985
  32. Sequence of the gene for iso-1-cytochrome c in Saccharomyces cerevisiae.
    Cell. 1979 Apr;16(4):753-61 PMID: 222467
  33. Estimation of evolutionary changes in certain homologous polypeptide chains.
    J Mol Biol. 1972 Feb 28;64(1):163-79 PMID: 5062730
  34. Nucleotide sequence of human beta globin messenger RNA.
    Hemoglobin. 1977;1(8):879-81 PMID: 342458
  35. Evolutionary variability of cytochrome c primary structures.
    Ann N Y Acad Sci. 1968 Jun 14;151(1):359-81 PMID: 4975694
  36. Improved procedures for comparing homologous sequences in molecules of proteins and nucleic acids.
    J Mol Biol. 1972 Feb 28;64(1):145-61 PMID: 5015396
  37. Empirical support for a stochastic model of evolution.
    J Mol Evol. 1972;1(3):211-22 PMID: 4681224
  38. Sequence data: magnitude and implications of some ambiguities.
    J Mol Evol. 1972 Dec 29;2(1):10-6 PMID: 4359066
  39. On the constancy of the evolutionary rate of cistrons.
    J Mol Evol. 1971;1(1):18-25 PMID: 4377445
  40. Non-randomness of base replacement in point mutation.
    J Mol Evol. 1972;1(3):334-67 PMID: 4681234
  41. The sequence of the chromosomal mouse beta-globin major gene: homologies in capping, splicing and poly(A) sites.
    Cell. 1978 Dec;15(4):1125-32 PMID: 569555
  42. Is the fixation of observable mutations distributed randomly among the three nucleotide positions of the codon?
    J Mol Evol. 1973;2(2-3):123-36 PMID: 4377770
  43. Goodman et al.'s method for augmenting the number of nucleotide substitutions.
    J Mol Evol. 1978 May 12;11(1):67-73 PMID: 660663
  44. Theoretical foundations for quantitative paleogenetics. Part III: The molecular divergence of nucleic acids and proteins for the case of genetic events of unequal probability.
    J Mol Evol. 1980 Dec;16(3-4):211-67 PMID: 7205964
  45. Molecular evolution of human and rabbit beta-globin mRNAs.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5618-22 PMID: 271989
  46. Nucleotide sequence and amplification in bacteria of structural gene for rat growth hormone.
    Nature. 1977 Dec 8;270(5637):486-94 PMID: 339105
  47. Aspects of molecular evolution.
    Annu Rev Genet. 1973;7:343-80 PMID: 4593308
  48. On investigating the statistical properties of the populous path algorithm by computer simulation. Counterconclusions to those of Tateno and Nei.
    J Mol Evol. 1978 May 12;11(1):75-85 PMID: 660664
  49. Phylogenetic analysis. Models and estimation procedures.
    Am J Hum Genet. 1967 May;19(3 Pt 1):233-57 PMID: 6026583
  50. Is there selection against wobble in codon-anticodon pairing?
    Science. 1976 Dec 10;194(4270):1173-4 PMID: 996548
  51. Are human hemoglobin variants distributed randomly among the positions?
    J Mol Evol. 1973;2(2-3):181-6 PMID: 4807188
  52. Evolutionary variability in hemoglobins.
    Hamatol Bluttransfus. 1972;10:199-215 PMID: 4667990
  53. Nucleotide sequence of bacteriophage G4 DNA.
    Nature. 1978 Nov 16;276(5685):236-47 PMID: 714153
  54. A method for estimating the number of invariant amino acid coding positions in a gene using cytochrome c as a model case.
    Biochem Genet. 1967 Jun;1(1):65-71 PMID: 5610702
  55. Human beta-globin messenger RNA. III. Nucleotide sequences derived from complementary DNA.
    J Biol Chem. 1977 Jul 25;252(14):5040-53 PMID: 68958
Article Info
Journal
Journal of molecular evolution
Abbr.
J Mol Evol
ISSN
0022-2844
Published
1980-12-00
Pages
153-209
Language
English
Region
Germany
NLM ID
0360051
Subset
IM
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