The nucleotide and amino acid coding sequence of a gene for H1 histone that interacts with euchromatin. The early embryonic H1 gene of the sea urchin Strongylocentrotus purpuratus.

We have determined the nucleotide sequence of the gene that codes for an H1 histone associated with euchromatin in the sea urchin Strongylocentrotus purpuratus. The gene codes for a protein of 205 amino acids. The nucleotide sequence of this gene is homologous to the sequence of H1 mRNA that is expressed during early embryonic development. We have compared the nucleotide and protein coding sequences of this H1 gene to those of the early H1 histone gene of the sea urchin Psammechinus miliaris. There is considerable drift by nucleotide substitution between the two genes randomly distributed across the mRNA coding region. Despite this divergence of nucleotide sequence, there are local constraints on amino acid substitutions throughout the molecule and especially in its central region. We have also compared the amino acid sequence in this central hydrophobic region of the euchromatic S. purpuratus H1 histone to the same region in H1 and H5 histones associated with heterochromatin. We show that certain amino acids are conserved and aligned in frameworks in all the sequenced H1 proteins.