Enlarged representative set of protein structures.
To reduce redundancy in the Protein Data Bank of 3D protein structures, which is caused by many homologous proteins in the data bank, we have selected a representative set of structures. The selection algorithm was designed to (1) select as many nonhomologous structures as possible, and (2) to select structures of good quality. The representative set may reduce time and effort in statistical analyses.
5 references, click to expand
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The Protein Data Bank: a computer-based archival file for macromolecular structures.J Mol Biol. 1977 May 25;112(3):535-42 PMID: 875032
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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.Biopolymers. 1983 Dec;22(12):2577-637 PMID: 6667333
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Prediction of protein secondary structure at better than 70% accuracy.J Mol Biol. 1993 Jul 20;232(2):584-99 PMID: 8345525
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A database of protein structure families with common folding motifs.Protein Sci. 1992 Dec;1(12):1691-8 PMID: 1304898
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Selection of representative protein data sets.Protein Sci. 1992 Mar;1(3):409-17 PMID: 1304348
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