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PMID: 8244011 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, P.H.S.

Effects of transposable elements on the expression of the forked gene of Drosophila melanogaster.

Genetics ·Vol. 135 ·No. 2 ·1993-10-00 ·Pages 507-26

Hoover KK, Chien AJ, Corces VG

Abstract

The products of the forked gene are involved in the formation and/or maintenance of a temporary fibrillar structure within the developing bristle rudiment of Drosophila melanogaster. Mutations in the forked locus alter this structure and result in aberrant development of macrochaetae, microchaetae and trichomes. The locus has been characterized at the molecular level by walking, mutant characterization and transcript analysis. Expression of the six forked transcripts is temporally restricted to mid-late pupal development. At this time, RNAs of 6.4, 5.6, 5.4, 2.5, 1.9 and 1.1 kilobases (kb) are detected by Northern analysis. The coding region of these RNAs has been found to be within a 21-kb stretch of genomic DNA. The amino terminus of the proteins encoded by the 5.4- and 5.6-kb forked transcripts contain tandem copies of ankyrin-like repeats that may play an important role in the function of forked-encoded products. The profile of forked RNA expression is altered in seven spontaneous mutations characterized during this study. Three forked mutations induced by the insertion of the gypsy retrotransposon contain a copy of this element inserted into an intron of the gene. In these mutants, the 5.6-, 5.4- and 2.5-kb forked mRNAs are truncated via recognition of the polyadenylation site in the 5' long terminal repeat of the gypsy retrotransposon. These results help explain the role of the forked gene in fly development and further our understanding of the role of transposable elements in mutagenesis.

MeSH Terms
Amino Acid Sequence Animals Ankyrins/genetics Base Sequence Consensus Sequence DNA/chemistry,genetics DNA Transposable Elements Drosophila Proteins Drosophila melanogaster/genetics,ultrastructure Gene Expression Insect Hormones/genetics Microfilament Proteins Microscopy, Electron, Scanning Molecular Sequence Data Mutagenesis, Insertional Phenotype Repetitive Sequences, Nucleic Acid Restriction Mapping Sequence Homology, Amino Acid Transcription, Genetic
Chemicals
Ankyrins DNA Transposable Elements Drosophila Proteins Insect Hormones Microfilament Proteins f protein, Drosophila DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Hoover K K
Department of Biology, Johns Hopkins University, Baltimore, Maryland 21218.
Chien A J
Corces V G
References (54)
54 references, click to expand
  1. Cloning and sequence analysis of the rat ventral prostate glucocorticoid receptor cDNA.
    Nucleic Acids Res. 1987 Nov 25;15(22):9603 PMID: 3684608
  2. Convergence of Ets- and notch-related structural motifs in a heteromeric DNA binding complex.
    Science. 1991 Aug 16;253(5021):762-8 PMID: 1876833
  3. A detailed developmental and structural study of the transcriptional effects of insertion of the Copia transposon into the white locus of Drosophila melanogaster.
    Genetics. 1985 Nov;111(3):495-515 PMID: 2414153
  4. The Notch locus of Drosophila melanogaster.
    Cell. 1983 Sep;34(2):421-33 PMID: 6193889
  5. Sequence of a Drosophila segmentation gene: protein structure homology with DNA-binding proteins.
    Nature. 1984 Jul 5-11;310(5972):25-31 PMID: 6330566
  6. The developmental genetics of the temperature sensitive lethal allele of the suppressor of forked, 1(1)su(f)ts67g, in Drosophila melanogaster.
    Genetics. 1974 Mar;76(3):487-510 PMID: 4208858
  7. Structural organization and sequence of the homeotic gene Antennapedia of Drosophila melanogaster.
    EMBO J. 1986 Apr;5(4):733-9 PMID: 10408949
  8. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose.
    Proc Natl Acad Sci U S A. 1972 Jun;69(6):1408-12 PMID: 4504350
  9. Cloning of a mitogen-inducible gene encoding a kappa B DNA-binding protein with homology to the rel oncogene and to cell-cycle motifs.
    Nature. 1990 Nov 1;348(6296):76-80 PMID: 2234062
  10. Molecular genetics of the achaete-scute gene complex of D. melanogaster.
    Cell. 1985 Feb;40(2):327-38 PMID: 3917860
  11. Developmentally regulated alternative splicing of Drosophila integrin PS2 alpha transcripts.
    Cell. 1989 Oct 6;59(1):185-95 PMID: 2507168
  12. The yeast SWI4 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription.
    Nature. 1989 Dec 14;342(6251):830-3 PMID: 2689885
  13. Forked, gypsys, and suppressors in Drosophila.
    Cell. 1985 Jun;41(2):429-37 PMID: 2985277
  14. Brain ankyrin. A membrane-associated protein with binding sites for spectrin, tubulin, and the cytoplasmic domain of the erythrocyte anion channel.
    J Biol Chem. 1984 Nov 10;259(21):13550-9 PMID: 6092380
  15. PHENOTYPIC VARIATION AND PSEUDO-ALLELISM AT THE FORKED LOCUS IN Drosophila Melanogaster.
    Proc Natl Acad Sci U S A. 1955 Jun 15;41(6):375-9 PMID: 16589682
  16. Expression of the cut locus in the Drosophila wing margin is required for cell type specification and is regulated by a distant enhancer.
    Development. 1991 Nov;113(3):735-47 PMID: 1821846
  17. Synergistic activation by the glutamine-rich domains of human transcription factor Sp1.
    Cell. 1989 Dec 1;59(5):827-36 PMID: 2512012
  18. Identification and genetic localization of mRNAs from ovarian follicle cells of Drosophila melanogaster.
    Cell. 1979 Mar;16(3):589-98 PMID: 110453
  19. Drosophila forked locus.
    Mol Cell Biol. 1986 Jan;6(1):1-6 PMID: 3023816
  20. An insertion within a variably spliced Drosophila tropomyosin gene blocks accumulation of only one encoded isoform.
    Cell. 1985 May;41(1):57-66 PMID: 2986850
  21. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  22. Alteration of hsp82 gene expression by the gypsy transposon and suppressor genes in Drosophila melanogaster.
    Genes Dev. 1989 Apr;3(4):454-68 PMID: 2542128
  23. lin-12, a nematode homeotic gene, is homologous to a set of mammalian proteins that includes epidermal growth factor.
    Cell. 1985 Dec;43(3 Pt 2):583-90 PMID: 3000611
  24. Drosophila transposable elements: mechanisms of mutagenesis and interactions with the host genome.
    Adv Genet. 1991;29:229-300 PMID: 1662469
  25. A catalogue of splice junction sequences.
    Nucleic Acids Res. 1982 Jan 22;10(2):459-72 PMID: 7063411
  26. Identification of Ets- and notch-related subunits in GA binding protein.
    Science. 1991 Aug 16;253(5021):789-92 PMID: 1876836
  27. Primary structure and expression of a product from cut, a locus involved in specifying sensory organ identity in Drosophila.
    Nature. 1988 Jun 16;333(6174):629-35 PMID: 2897632
  28. The Drosophila melanogaster gypsy transposable element encodes putative gene products homologous to retroviral proteins.
    Mol Cell Biol. 1986 Apr;6(4):1129-34 PMID: 3023871
  29. Cloning, sequencing and transcriptional control of the Schizosaccharomyces pombe cdc10 'start' gene.
    EMBO J. 1985 Feb;4(2):457-63 PMID: 4018034
  30. Partial revertants of the transposable element-associated suppressible allele white-apricot in Drosophila melanogaster: structures and responsiveness to genetic modifiers.
    Genetics. 1988 Feb;118(2):221-34 PMID: 2834265
  31. Dual Bar homeo box genes of Drosophila required in two photoreceptor cells, R1 and R6, and primary pigment cells for normal eye development.
    Genes Dev. 1992 Jan;6(1):50-60 PMID: 1346120
  32. Structure of transcripts from the homeotic Antennapedia gene of Drosophila melanogaster: two promoters control the major protein-coding region.
    Mol Cell Biol. 1986 Dec;6(12):4676-89 PMID: 2879223
  33. Retrotransposon-induced overexpression of a homeobox gene causes defects in eye morphogenesis in Drosophila.
    EMBO J. 1991 Feb;10(2):407-17 PMID: 1671353
  34. The structure of hobo transposable elements and their insertion sites.
    EMBO J. 1986 Dec 20;5(13):3615-23 PMID: 16453744
  35. glp-1 and lin-12, genes implicated in distinct cell-cell interactions in C. elegans, encode similar transmembrane proteins.
    Cell. 1989 Aug 11;58(3):553-63 PMID: 2758466
  36. Structures of P transposable elements and their sites of insertion and excision in the Drosophila melanogaster genome.
    Cell. 1983 Aug;34(1):25-35 PMID: 6309410
  37. Dominant effects of suppressor of Hairy-wing mutations on gypsy-induced alleles of forked and cut in Drosophila melanogaster.
    Genetics. 1992 Nov;132(3):691-7 PMID: 1334893
  38. DNA sequences homologous to the Drosophila opa repeat are present in murine mRNAs that are differentially expressed in fetuses and adult tissues.
    Mol Cell Biol. 1987 May;7(5):2003-6 PMID: 2885744
  39. Translational and transcriptional control elements in the untranslated leader of the heat-shock gene hsp22.
    Cell. 1986 Feb 14;44(3):429-38 PMID: 3943132
  40. The product of fem-1, a nematode sex-determining gene, contains a motif found in cell cycle control proteins and receptors for cell-cell interactions.
    Cell. 1990 Mar 23;60(6):981-90 PMID: 2317869
  41. Genetic interactions of modifier genes and modifiable alleles in Drosophila melanogaster.
    Genetics. 1988 Jun;119(2):391-7 PMID: 2840337
  42. Segmental distribution of bithorax complex proteins during Drosophila development.
    Nature. 1985 Feb 14-20;313(6003):545-51 PMID: 3918274
  43. Relation of puffing to bristle and footpad differentiation in Calliphora and Sarcophaga.
    Results Probl Cell Differ. 1972;4:153-79 PMID: 4579363
  44. GAL11 protein, an auxiliary transcription activator for genes encoding galactose-metabolizing enzymes in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Nov;8(11):4991-9 PMID: 3062377
  45. Eukaryotic start and stop translation sites.
    Nucleic Acids Res. 1991 Jun 25;19(12):3185-92 PMID: 1905801
  46. Characterization and developmental expression of a Drosophila ras oncogene.
    Mol Cell Biol. 1985 Apr;5(4):885-9 PMID: 3921827
  47. Molecular analysis of SSN6, a gene functionally related to the SNF1 protein kinase of Saccharomyces cerevisiae.
    Mol Cell Biol. 1987 Oct;7(10):3637-45 PMID: 3316983
  48. Interactions of retrotransposons with the host genome: the case of the gypsy element of Drosophila.
    Trends Genet. 1991 Mar;7(3):86-90 PMID: 1851585
  49. Analysis of cDNA for human erythrocyte ankyrin indicates a repeated structure with homology to tissue-differentiation and cell-cycle control proteins.
    Nature. 1990 Mar 1;344(6261):36-42 PMID: 2137557
  50. Characterization of enhancer-of-white-apricot in Drosophila melanogaster.
    Genetics. 1990 Dec;126(4):1061-9 PMID: 1706290
  51. Homeo box genes of the Antennapedia and bithorax complexes of Drosophila.
    Cell. 1985 Nov;43(1):71-80 PMID: 2416463
  52. Molecular cloning of engrailed: a gene involved in the development of pattern in Drosophila melanogaster.
    Cell. 1985 Aug;42(1):309-16 PMID: 2990728
  53. The structural basis of ankyrin function. II. Identification of two functional domains.
    J Biol Chem. 1984 May 25;259(10):6170-5 PMID: 6233274
  54. Nucleotide sequence characterization of a Drosophila retrotransposon, 412.
    Eur J Biochem. 1986 Jul 15;158(2):403-10 PMID: 2426108
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
1993-10-00
Pages
507-26
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1205652
Subset
IM
Grants
NIGMS NIH HHS · GM35463 · United States
Databases
GENBANK
L20577, L20578, L20579, L20580, L20581, L20582, L20583, L20584, M38530, X69871
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