Home LiteratureArticle Details
PMID: 8582634 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Roles of ABF1, NPL3, and YCL54 in silencing in Saccharomyces cerevisiae.

Genetics ·Vol. 141 ·No. 3 ·1995-11-00 ·Pages 889-902

Loo S, Laurenson P, Foss M, Dillin A, Rine J

Abstract

A sensitized genetic screen was carried out to identify essential genes involved in silencing in Saccharomyces cerevisiae. This screen identified temperature-sensitive alleles of ORC2 and ORC5, as described elsewhere, and ABF1, NPL3, and YCL54, as described here. Alleles of ABF1 that caused silencing defects provided the genetic proof of Abflp's role in silencing. The roles of Npl3p and Ycl54p are less clear. These proteins did not act exclusively through any one of the three protein binding sites of the HMR-E silencer. Unlike the orc2, orc5, and abf1 mutations that were isolated in the same (or a similar) screen for silencing mutants, neither temperature-sensitive mutation in NPL3 or YCL54 caused overt replication defects.

MeSH Terms
Alleles Amino Acid Sequence Cell Cycle DNA-Binding Proteins/genetics,physiology Escherichia coli/genetics Fungal Proteins/genetics,physiology Gene Expression Regulation, Fungal Mating Factor Methyltransferases Molecular Sequence Data Mutagenesis Nuclear Proteins/genetics,physiology Peptides/genetics RNA-Binding Proteins Regulatory Sequences, Nucleic Acid Saccharomyces cerevisiae/genetics,growth & development Saccharomyces cerevisiae Proteins Sequence Alignment Sequence Homology, Amino Acid Temperature Transcription Factors/genetics,physiology Transcription, Genetic
Chemicals
ABF1 protein, S cerevisiae DNA-Binding Proteins Fungal Proteins NPL3 protein, S cerevisiae Nuclear Proteins Peptides RNA-Binding Proteins Saccharomyces cerevisiae Proteins Transcription Factors Mating Factor Methyltransferases SPB1 protein, S cerevisiae
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Loo S
Department of Molecular and Cell Biology, University of California, Berkeley 94720, USA.
Laurenson P
Foss M
Dillin A
Rine J
References (55)
55 references, click to expand
  1. Regulation of mating and meiosis in yeast by the mating-type region.
    Genetics. 1976 Feb;82(2):187-206 PMID: 770230
  2. The complete DNA sequence of yeast chromosome III.
    Nature. 1992 May 7;357(6373):38-46 PMID: 1574125
  3. A suppressor of mating-type locus mutations in Saccharomyces cerevisiae: evidence for and identification of cryptic mating-type loci.
    Genetics. 1979 Dec;93(4):877-901 PMID: 397913
  4. Control of cell type in yeast by the mating type locus. The alpha 1-alpha 2 hypothesis.
    J Mol Biol. 1981 Apr 15;147(3):357-72 PMID: 7031257
  5. Homothallic switching of yeast mating type cassettes is initiated by a double-stranded cut in the MAT locus.
    Cell. 1982 Nov;31(1):183-92 PMID: 6297747
  6. Regulation of mating-type information in yeast. Negative control requiring sequences both 5' and 3' to the regulated region.
    J Mol Biol. 1984 Jul 5;176(3):307-31 PMID: 6379190
  7. Involvement of double-strand chromosomal breaks for mating-type switching in Saccharomyces cerevisiae.
    Cold Spring Harb Symp Quant Biol. 1984;49:77-88 PMID: 6099258
  8. Characterization of a "silencer" in yeast: a DNA sequence with properties opposite to those of a transcriptional enhancer.
    Cell. 1985 May;41(1):41-8 PMID: 3888409
  9. A general upstream binding factor for genes of the yeast translational apparatus.
    EMBO J. 1985 Dec 16;4(13A):3539-47 PMID: 3912170
  10. Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae.
    Genetics. 1987 May;116(1):9-22 PMID: 3297920
  11. A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation.
    Cell. 1987 Dec 4;51(5):709-19 PMID: 3315230
  12. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli.
    Gene. 1987;57(2-3):267-72 PMID: 3319781
  13. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Jan;8(1):210-25 PMID: 3275867
  14. Purification of a yeast protein that binds to origins of DNA replication and a transcriptional silencer.
    Proc Natl Acad Sci U S A. 1988 Apr;85(7):2120-4 PMID: 3281162
  15. Changes in histone gene dosage alter transcription in yeast.
    Genes Dev. 1988 Feb;2(2):150-9 PMID: 2834270
  16. Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast.
    Cell. 1988 Oct 7;55(1):27-39 PMID: 3048701
  17. A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.
    Cell. 1989 Mar 10;56(5):771-6 PMID: 2647300
  18. The gene encoding ARS-binding factor I is essential for the viability of yeast.
    Genes Dev. 1989 Dec;3(12A):1926-39 PMID: 2620828
  19. Genetic analysis of histone H4: essential role of lysines subject to reversible acetylation.
    Science. 1990 Feb 16;247(4944):841-5 PMID: 2106160
  20. Mitotic chromosome transmission fidelity mutants in Saccharomyces cerevisiae.
    Genetics. 1990 Feb;124(2):237-49 PMID: 2407610
  21. Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1990 Aug;87(16):6286-90 PMID: 2201024
  22. Point mutations in the yeast histone H4 gene prevent silencing of the silent mating type locus HML.
    Mol Cell Biol. 1990 Sep;10(9):4932-4 PMID: 2117703
  23. An origin of DNA replication and a transcription silencer require a common element.
    Science. 1992 May 1;256(5057):659-63 PMID: 1585179
  24. A mutant nuclear protein with similarity to RNA binding proteins interferes with nuclear import in yeast.
    Mol Biol Cell. 1992 Aug;3(8):875-93 PMID: 1392078
  25. NOP3 is an essential yeast protein which is required for pre-rRNA processing.
    J Cell Biol. 1992 Nov;119(4):737-47 PMID: 1429834
  26. Transcriptional silencing in yeast is associated with reduced nucleosome acetylation.
    Genes Dev. 1993 Apr;7(4):592-604 PMID: 8458576
  27. Origin recognition complex (ORC) in transcriptional silencing and DNA replication in S. cerevisiae.
    Science. 1993 Dec 17;262(5141):1838-44 PMID: 8266071
  28. Yeast origin recognition complex functions in transcription silencing and DNA replication.
    Science. 1993 Dec 17;262(5141):1844-9 PMID: 8266072
  29. Histone H3 amino terminus is required for telomeric and silent mating locus repression in yeast.
    Nature. 1994 May 19;369(6477):245-7 PMID: 8183346
  30. Silencers and domains of generalized repression.
    Science. 1994 Jun 17;264(5166):1768-71 PMID: 8209257
  31. RAP1: a protean regulator in yeast.
    Trends Genet. 1994 Nov;10(11):408-12 PMID: 7809947
  32. Action of a RAP1 carboxy-terminal silencing domain reveals an underlying competition between HMR and telomeres in yeast.
    Genes Dev. 1995 Feb 1;9(3):370-84 PMID: 7867933
  33. The origin recognition complex has essential functions in transcriptional silencing and chromosomal replication.
    Genes Dev. 1995 Apr 15;9(8):911-24 PMID: 7774809
  34. The origin recognition complex in silencing, cell cycle progression, and DNA replication.
    Mol Biol Cell. 1995 Jun;6(6):741-56 PMID: 7579692
  35. Silencing and heritable domains of gene expression.
    Annu Rev Cell Dev Biol. 1995;11:519-48 PMID: 8689568
  36. Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication.
    EMBO J. 1987 Feb;6(2):461-7 PMID: 15981337
  37. A mutation that permits the expression of normally silent copies of mating-type information in Saccharomyces cerevisiae.
    Genetics. 1979 Sep;93(1):13-35 PMID: 16118901
  38. Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo.
    Proc Natl Acad Sci U S A. 1992 May 1;89(9):4062-5 PMID: 1570334
  39. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
    Genetics. 1989 May;122(1):19-27 PMID: 2659436
  40. Epigenetic inheritance of transcriptional states in S. cerevisiae.
    Cell. 1989 Nov 17;59(4):637-47 PMID: 2684414
  41. Isolation and DNA-binding characteristics of a protein involved in transcription activation of two divergently transcribed, essential yeast genes.
    EMBO J. 1989 Oct;8(10):3029-37 PMID: 2684633
  42. Similarity between the transcriptional silencer binding proteins ABF1 and RAP1.
    Science. 1989 Nov 24;246(4933):1034-8 PMID: 2511628
  43. Sequence, expression and mutational analysis of BAF1, a transcriptional activator and ARS1-binding protein of the yeast Saccharomyces cerevisiae.
    EMBO J. 1989 Dec 20;8(13):4265-72 PMID: 2686983
  44. Structure and function of telomeres.
    Annu Rev Genet. 1989;23:579-604 PMID: 2694944
  45. ABF1 binding sites in yeast RNA polymerase genes.
    J Biol Chem. 1990 Sep 5;265(25):15168-75 PMID: 2203770
  46. ARS binding factor 1 binds adjacent to RAP1 at the UASs of the yeast glycolytic genes PGK and PYK1.
    Nucleic Acids Res. 1990 Sep 25;18(18):5393-9 PMID: 2120676
  47. Position effects on eukaryotic gene expression.
    Annu Rev Cell Biol. 1990;6:679-714 PMID: 2275824
  48. RAP1 protein activates and silences transcription of mating-type genes in yeast.
    Genes Dev. 1991 Apr;5(4):616-28 PMID: 2010087
  49. The Saccharomyces cerevisiae STE14 gene encodes a methyltransferase that mediates C-terminal methylation of a-factor and RAS proteins.
    EMBO J. 1991 Jul;10(7):1699-709 PMID: 2050108
  50. Separation of transcriptional activation and silencing functions of the RAP1-encoded repressor/activator protein 1: isolation of viable mutants affecting both silencing and telomere length.
    Proc Natl Acad Sci U S A. 1991 Sep 1;88(17):7749-53 PMID: 1881914
  51. Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae.
    Cell. 1991 Sep 20;66(6):1279-87 PMID: 1913809
  52. A synthetic silencer mediates SIR-dependent functions in Saccharomyces cerevisiae.
    Mol Cell Biol. 1991 Nov;11(11):5648-59 PMID: 1922068
  53. Structure and function of the ftsH gene in Escherichia coli.
    Res Microbiol. 1991 Feb-Apr;142(2-3):279-82 PMID: 1925026
  54. Role of multifunctional autonomously replicating sequence binding factor 1 in the initiation of DNA replication and transcriptional control in Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Mar;12(3):1064-77 PMID: 1545789
  55. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments.
    Gene. 1979 Dec;8(1):17-24 PMID: 395030
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
1995-11-00
Pages
889-902
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1206852
Subset
IM
Grants
NIGMS NIH HHS · GM-31105 · United States
NIEHS NIH HHS · P30ESO1896-12 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]