Home LiteratureArticle Details
PMID: 8990298 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

The VirB4 ATPase of Agrobacterium tumefaciens is a cytoplasmic membrane protein exposed at the periplasmic surface.

Journal of bacteriology ·Vol. 179 ·No. 2 ·1997-01-00 ·Pages 453-62

Dang TA, Christie PJ

Abstract

The VirB4 ATPase of Agrobacterium tumefaciens, a putative component of the T-complex transport apparatus, associates with the cytoplasmic membrane independently of other products of the Ti plasmid. VirB4 was resistant to extraction from membranes of wild-type strain A348 or a Ti-plasmidless strain expressing virB4 from an IncP replicon. To evaluate the membrane topology of VirB4, a nested deletion method was used to generate a high frequency of random fusions between virB4 and 'phoA, which encodes a periplasmically active alkaline phosphatase (AP) deleted of its signal sequence. VirB4::PhoA hybrid proteins exhibiting AP activity in Escherichia coli and A. tumefaciens had junction sites that mapped to two regions, between residues 58 and 84 (region 1) and between residues 450 and 514 (region 2). Conversely, VirB4::beta-galactosidase hybrid proteins with junction sites mapping to regions 1 and 2 exhibited low beta-galactosidase activities and hybrid proteins with junction sites elsewhere exhibited high beta-galactosidase activities. Enzymatically active VirB5::PhoA hybrid proteins had junction sites that were distributed throughout the length of the protein. Proteinase K treatment of A. tumefaciens spheroplasts resulted in the disappearance of the 87-kDa VirB4 protein and the concomitant appearance of two immunoreactive species of approximately 35 and approximately 45 kDa. Taken together, our data support a model in which VirB4 is topologically configured as an integral cytoplasmic membrane protein with two periplasmic domains.

MeSH Terms
Adenosine Triphosphatases/genetics,metabolism Agrobacterium tumefaciens/enzymology Alkaline Phosphatase/genetics Bacterial Proteins/genetics,metabolism Cloning, Molecular Endopeptidase K/metabolism Exodeoxyribonucleases/metabolism Gene Deletion Lac Operon Membrane Proteins/genetics,metabolism Recombinant Fusion Proteins/genetics,metabolism Virulence Factors
Chemicals
Bacterial Proteins Membrane Proteins Recombinant Fusion Proteins Virulence Factors Exodeoxyribonucleases exodeoxyribonuclease III Alkaline Phosphatase Endopeptidase K Adenosine Triphosphatases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Dang T A
Department of Microbiology and Molecular Genetics, The University of Texas Health Science Center at Houston, 77030, USA.
Christie P J
References (57)
57 references, click to expand
  1. Analysis of the complete nucleotide sequence of the Agrobacterium tumefaciens virB operon.
    Nucleic Acids Res. 1988 May 25;16(10):4621-36 PMID: 2837739
  2. The product of the virB4 gene of Agrobacterium tumefaciens promotes accumulation of VirB3 protein.
    J Bacteriol. 1994 Sep;176(17):5255-61 PMID: 8071199
  3. Topogenic signals in integral membrane proteins.
    Eur J Biochem. 1988 Jul 1;174(4):671-8 PMID: 3134198
  4. Conjugative Transfer by the Virulence System of Agrobacterium tumefaciens.
    Science. 1992 May 29;256(5061):1324-7 PMID: 17736763
  5. A protein required for transcriptional regulation of Agrobacterium virulence genes spans the cytoplasmic membrane.
    J Bacteriol. 1989 Mar;171(3):1616-22 PMID: 2921246
  6. Analysis of mutations in the transmembrane region of the aspartate chemoreceptor in Escherichia coli.
    Proc Natl Acad Sci U S A. 1986 Sep;83(18):6930-4 PMID: 3018752
  7. Genetic complementation analysis of the Agrobacterium tumefaciens virB operon: virB2 through virB11 are essential virulence genes.
    J Bacteriol. 1994 Jun;176(12):3646-60 PMID: 8206843
  8. Molecular characterization of an operon required for pertussis toxin secretion.
    Proc Natl Acad Sci U S A. 1993 Apr 1;90(7):2970-4 PMID: 8464913
  9. Solubilization of membranes by detergents.
    Biochim Biophys Acta. 1975 Mar 25;415(1):29-79 PMID: 1091302
  10. Protein-protein interaction converts a proton pump into a sensory receptor.
    Cell. 1994 Dec 2;79(5):747-50 PMID: 8001113
  11. Agrobacterium tumefaciens and the susceptible plant cell: a novel adaptation of extracellular recognition and DNA conjugation.
    Cell. 1986 Oct 24;47(2):155-7 PMID: 3768954
  12. Localization of TraC, a protein involved in assembly of the F conjugative pilus.
    J Bacteriol. 1992 Jun;174(11):3800-6 PMID: 1350587
  13. Characterization of the virB operon from an Agrobacterium tumefaciens Ti plasmid.
    J Biol Chem. 1988 Apr 25;263(12):5804-14 PMID: 3281947
  14. An essential virulence protein of Agrobacterium tumefaciens, VirB4, requires an intact mononucleotide binding domain to function in transfer of T-DNA.
    Mol Gen Genet. 1994 Dec 15;245(6):704-15 PMID: 7830718
  15. An inner-membrane-associated virulence protein essential for T-DNA transfer from Agrobacterium tumefaciens to plants exhibits ATPase activity and similarities to conjugative transfer genes.
    Mol Microbiol. 1994 Feb;11(3):581-8 PMID: 8152380
  16. Localization and orientation of the VirD4 protein of Agrobacterium tumefaciens in the cell membrane.
    Mol Gen Genet. 1991 Aug;228(1-2):24-32 PMID: 1909421
  17. Common ancestry between IncN conjugal transfer genes and macromolecular export systems of plant and animal pathogens.
    Mol Microbiol. 1994 Nov;14(4):655-68 PMID: 7891554
  18. The genetic and transcriptional organization of the vir region of the A6 Ti plasmid of Agrobacterium tumefaciens.
    EMBO J. 1986 Jul;5(7):1445-54 PMID: 3017694
  19. Agrobacterium tumefaciens VirB11 protein requires a consensus nucleotide-binding site for function in virulence.
    J Bacteriol. 1995 Jan;177(1):27-36 PMID: 7798144
  20. Pilus assembly by Agrobacterium T-DNA transfer genes.
    Science. 1996 Aug 23;273(5278):1107-9 PMID: 8688097
  21. Membrane topology analysis of Escherichia coli mannitol permease by using a nested-deletion method to create mtlA-phoA fusions.
    Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9603-7 PMID: 1946374
  22. The virB operon of Agrobacterium tumefaciens pTiC58 encodes 11 open reading frames.
    Mol Gen Genet. 1990 Apr;221(2):256-66 PMID: 2370849
  23. A gene required for transfer of T-DNA to plants encodes an ATPase with autophosphorylating activity.
    Proc Natl Acad Sci U S A. 1989 Dec;86(24):9677-81 PMID: 2532360
  24. Structural model of the nucleotide-binding conserved component of periplasmic permeases.
    Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):84-8 PMID: 1986384
  25. The MalK protein of the ATP-binding cassette transporter for maltose of Escherichia coli is accessible to protease digestion from the periplasmic side of the membrane.
    J Bacteriol. 1995 Sep;177(18):5364-7 PMID: 7665528
  26. The ATP-binding component of a prokaryotic traffic ATPase is exposed to the periplasmic (external) surface.
    Proc Natl Acad Sci U S A. 1993 Jan 15;90(2):620-4 PMID: 7678461
  27. Relationship of DNA-transfer-systems: essential transfer factors of plasmids RP4, Ti and F share common sequences.
    Nucleic Acids Res. 1992 Nov 25;20(22):6099-100 PMID: 1461742
  28. Positively charged residues are important determinants of membrane protein topology.
    Trends Biochem Sci. 1990 Jul;15(7):253-7 PMID: 2200169
  29. Correction: characterization of the virB operon from Agrobacterium tumefaciens Ti plasmid.
    J Biol Chem. 1990 Mar 15;265(8):4768 PMID: 2307685
  30. Plasmid required for virulence of Agrobacterium tumefaciens.
    J Bacteriol. 1975 Jul;123(1):255-64 PMID: 1141196
  31. The Agrobacterium tumefaciens virB4 gene product is an essential virulence protein requiring an intact nucleoside triphosphate-binding domain.
    J Bacteriol. 1993 Mar;175(6):1723-34 PMID: 8449880
  32. Nucleotide sequence of the F plasmid gene, traC, and identification of its product.
    Gene. 1990 Nov 30;96(1):137-40 PMID: 2265751
  33. Intermolecular disulfide bonds stabilize VirB7 homodimers and VirB7/VirB9 heterodimers during biogenesis of the Agrobacterium tumefaciens T-complex transport apparatus.
    Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):7512-7 PMID: 8755505
  34. lac permease of Escherichia coli: topology and sequence elements promoting membrane insertion.
    Proc Natl Acad Sci U S A. 1990 Jul;87(13):4937-41 PMID: 2164211
  35. Essential motifs of relaxase (TraI) and TraG proteins involved in conjugative transfer of plasmid RP4.
    J Bacteriol. 1994 Jul;176(14):4285-95 PMID: 8021214
  36. Analysis of membrane protein topology using alkaline phosphatase and beta-galactosidase gene fusions.
    Methods Cell Biol. 1991;34:61-75 PMID: 1943817
  37. The Agrobacterium tumefaciens virB7 gene product, a proposed component of the T-complex transport apparatus, is a membrane-associated lipoprotein exposed at the periplasmic surface.
    J Bacteriol. 1996 Jun;178(11):3156-67 PMID: 8655494
  38. Localization and topology of VirB proteins of Agrobacterium tumefaciens.
    Plasmid. 1994 Sep;32(2):212-8 PMID: 7846145
  39. Interactions of VirB9, -10, and -11 with the membrane fraction of Agrobacterium tumefaciens: solubility studies provide evidence for tight associations.
    J Bacteriol. 1995 Sep;177(17):4881-9 PMID: 7665464
  40. SecA protein is exposed to the periplasmic surface of the E. coli inner membrane in its active state.
    Cell. 1994 Sep 9;78(5):845-53 PMID: 8087851
  41. Controlled expression of the transcriptional activator gene virG in Agrobacterium tumefaciens by using the Escherichia coli lac promoter.
    J Bacteriol. 1991 Feb;173(3):1139-44 PMID: 1991713
  42. Sequence similarities between the RP4 Tra2 and the Ti VirB region strongly support the conjugation model for T-DNA transfer.
    J Biol Chem. 1992 Oct 5;267(28):20471-80 PMID: 1400366
  43. Membrane protein spanning segments as export signals.
    J Mol Biol. 1992 Apr 5;224(3):539-43 PMID: 1569545
  44. Transfer of T-DNA from Agrobacterium to the plant cell.
    Plant Physiol. 1995 Apr;107(4):1041-7 PMID: 7770515
  45. Protein-protein interaction in transport: periplasmic histidine-binding protein J interacts with P protein.
    Proc Natl Acad Sci U S A. 1976 Jun;73(6):1877-81 PMID: 778848
  46. Intrinsic anion channel activity of the recombinant first nucleotide binding fold domain of the cystic fibrosis transmembrane regulator protein.
    Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1539-43 PMID: 1371876
  47. The Agrobacterium tumefaciens VirB7 lipoprotein is required for stabilization of VirB proteins during assembly of the T-complex transport apparatus.
    J Bacteriol. 1996 Jun;178(11):3168-76 PMID: 8655495
  48. Common mechanisms in bacterial conjugation and Ti-mediated T-DNA transfer to plant cells.
    Cell. 1994 May 6;77(3):321-4 PMID: 8181052
  49. Helicobacter pylori picB, a homologue of the Bordetella pertussis toxin secretion protein, is required for induction of IL-8 in gastric epithelial cells.
    Mol Microbiol. 1995 Dec;18(5):867-76 PMID: 8825091
  50. The dnaA gene of Rhizobium meliloti lies within an unusual gene arrangement.
    J Bacteriol. 1995 May;177(10):2892-900 PMID: 7751302
  51. Structural model of ATP-binding proteins associated with cystic fibrosis, multidrug resistance and bacterial transport.
    Nature. 1990 Jul 26;346(6282):362-5 PMID: 1973824
  52. Genetic analysis of crown gall: fine structure map of the T-DNA by site-directed mutagenesis.
    Cell. 1981 Nov;27(1 Pt 2):143-53 PMID: 6276020
  53. Complementation analysis of Agrobacterium tumefaciens Ti plasmid virB genes by use of a vir promoter expression vector: virB9, virB10, and virB11 are essential virulence genes.
    J Bacteriol. 1990 Sep;172(9):5187-99 PMID: 2203743
  54. Inhibition of VirB-mediated transfer of diverse substrates from Agrobacterium tumefaciens by the IncQ plasmid RSF1010.
    J Bacteriol. 1995 Sep;177(17):4890-9 PMID: 7665465
  55. Escherichia coli alkaline phosphatase localized to the cytoplasm slowly acquires enzymatic activity in cells whose growth has been suspended: a caution for gene fusion studies.
    J Bacteriol. 1995 Jul;177(13):3764-70 PMID: 7601842
  56. The Agrobacterium tumefaciens virE2 gene product is a single-stranded-DNA-binding protein that associates with T-DNA.
    J Bacteriol. 1988 Jun;170(6):2659-67 PMID: 2836366
  57. Characterization of the virB operon of an Agrobacterium tumefaciens Ti plasmid: nucleotide sequence and protein analysis.
    Mol Microbiol. 1990 Jul;4(7):1153-63 PMID: 2233252
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1997-01-00
Pages
453-62
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC178716
Subset
IM
Grants
NIGMS NIH HHS · R01 GM048746 · United States
NIGMS NIH HHS · GM48746 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]