Home LiteratureArticle Details
PMID: 9398673 Published · ppublish English Journal Article

Characterization of Saccharomyces cerevisiae dna2 mutants suggests a role for the helicase late in S phase.

Molecular biology of the cell ·Vol. 8 ·No. 12 ·1997-12-00 ·Pages 2519-37

Fiorentino DF, Crabtree GR

Abstract

The TOR proteins, originally identified as targets of the immunosuppressant rapamycin, contain an ATM-like "lipid kinase" domain and are required for early G1 progression in eukaryotes. Using a screen to identify Saccharomyces cerevisiae mutants requiring overexpression of Tor1p for viability, we have isolated mutations in a gene we call ROT1 (requires overexpression of Tor1p). This gene is identical to DNA2, encoding a helicase required for DNA replication. As with its role in cell cycle progression, both the N-terminal and C-terminal regions, as well as the kinase domain of Tor1p, are required for rescue of dna2 mutants. Dna2 mutants are also rescued by Tor2p and show synthetic lethality with tor1 deletion mutants under specific conditions. Temperature-sensitive (Ts) dna2 mutants arrest irreversibly at G2/M in a RAD9- and MEC1-dependent manner, suggesting that Dna2p has a role in S phase. Frequencies of mitotic recombination and chromosome loss are elevated in dna2 mutants, also supporting a role for the protein in DNA synthesis. Temperature-shift experiments indicate that Dna2p functions during late S phase, although dna2 mutants are not deficient in bulk DNA synthesis. These data suggest that Dna2p is not required for replication fork progression but may be needed for a later event such as Okazaki fragment maturation.

MeSH Terms
Adenosine Triphosphatases/chemistry,genetics,metabolism Amino Acid Sequence Cell Cycle Proteins/genetics,metabolism Cloning, Molecular DNA Helicases/chemistry,genetics,metabolism DNA Replication/genetics DNA, Fungal/biosynthesis,chemistry,genetics,metabolism Fungal Proteins/chemistry,genetics,metabolism Gene Expression Genes, Essential/genetics Genes, Fungal/genetics,physiology Genes, Suppressor/genetics Intracellular Signaling Peptides and Proteins Molecular Sequence Data Mutation/genetics Phenotype Phosphatidylinositol 3-Kinases Phosphotransferases (Alcohol Group Acceptor)/chemistry,genetics,metabolism Protein Binding Protein Serine-Threonine Kinases Recombination, Genetic/genetics S Phase/genetics Saccharomyces cerevisiae/cytology,enzymology,genetics Saccharomyces cerevisiae Proteins Sequence Deletion/genetics Temperature
Chemicals
Cell Cycle Proteins DNA, Fungal Fungal Proteins Intracellular Signaling Peptides and Proteins Saccharomyces cerevisiae Proteins rad9 protein Phosphotransferases (Alcohol Group Acceptor) TOR1 protein, S cerevisiae TOR2 protein, S cerevisiae MEC1 protein, S cerevisiae Protein Serine-Threonine Kinases Adenosine Triphosphatases DNA Helicases DNA2 protein, S cerevisiae
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Fiorentino D F
Department of Developmental Biology, Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305, USA.
Crabtree G R
References (68)
68 references, click to expand
  1. Yeast checkpoint genes in DNA damage processing: implications for repair and arrest.
    Science. 1995 Dec 1;270(5241):1488-91 PMID: 7491494
  2. FKBP12-rapamycin target TOR2 is a vacuolar protein with an associated phosphatidylinositol-4 kinase activity.
    EMBO J. 1995 Dec 1;14(23):5892-907 PMID: 8846782
  3. Nutrients, via the Tor proteins, stimulate the association of Tap42 with type 2A phosphatases.
    Genes Dev. 1996 Aug 1;10(15):1904-16 PMID: 8756348
  4. TOR controls translation initiation and early G1 progression in yeast.
    Mol Biol Cell. 1996 Jan;7(1):25-42 PMID: 8741837
  5. Rapamycin selectively represses translation of the "polypyrimidine tract" mRNA family.
    Proc Natl Acad Sci U S A. 1994 May 10;91(10):4441-5 PMID: 8183928
  6. TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast.
    Mol Biol Cell. 1994 Jan;5(1):105-18 PMID: 8186460
  7. A mammalian protein targeted by G1-arresting rapamycin-receptor complex.
    Nature. 1994 Jun 30;369(6483):756-8 PMID: 8008069
  8. RAFT1: a mammalian protein that binds to FKBP12 in a rapamycin-dependent fashion and is homologous to yeast TORs.
    Cell. 1994 Jul 15;78(1):35-43 PMID: 7518356
  9. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII.
    Science. 1994 Sep 30;265(5181):2077-82 PMID: 8091229
  10. Mitotic checkpoint genes in budding yeast and the dependence of mitosis on DNA replication and repair.
    Genes Dev. 1994 Mar 15;8(6):652-65 PMID: 7926756
  11. Enzymatic completion of mammalian lagging-strand DNA replication.
    Proc Natl Acad Sci U S A. 1994 Oct 11;91(21):9803-7 PMID: 7524089
  12. Rapamycin selectively inhibits translation of mRNAs encoding elongation factors and ribosomal proteins.
    Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11477-81 PMID: 7972087
  13. RAPT1, a mammalian homolog of yeast Tor, interacts with the FKBP12/rapamycin complex.
    Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12574-8 PMID: 7809080
  14. TOR2 is required for organization of the actin cytoskeleton in yeast.
    Proc Natl Acad Sci U S A. 1996 Nov 26;93(24):13780-5 PMID: 8943012
  15. The yeast phosphatidylinositol kinase homolog TOR2 activates RHO1 and RHO2 via the exchange factor ROM2.
    Cell. 1997 Feb 21;88(4):531-42 PMID: 9038344
  16. A yeast replicative helicase, Dna2 helicase, interacts with yeast FEN-1 nuclease in carrying out its essential function.
    Mol Cell Biol. 1997 Apr;17(4):2136-42 PMID: 9121462
  17. Regulation of RAD53 by the ATM-like kinases MEC1 and TEL1 in yeast cell cycle checkpoint pathways.
    Science. 1996 Jan 19;271(5247):357-60 PMID: 8553072
  18. Role of p70 S6 protein kinase in angiotensin II-induced protein synthesis in vascular smooth muscle cells.
    J Biol Chem. 1995 Mar 10;270(10):5225-31 PMID: 7534292
  19. Suppression of mutations in two Saccharomyces cerevisiae genes by the adenovirus E1A protein.
    Mol Cell Biol. 1995 Jun;15(6):3227-37 PMID: 7760818
  20. TOR kinase domains are required for two distinct functions, only one of which is inhibited by rapamycin.
    Cell. 1995 Jul 14;82(1):121-30 PMID: 7606777
  21. Control of PHAS-I by insulin in 3T3-L1 adipocytes. Synthesis, degradation, and phosphorylation by a rapamycin-sensitive and mitogen-activated protein kinase-independent pathway.
    J Biol Chem. 1995 Aug 4;270(31):18531-8 PMID: 7629182
  22. cAMP- and rapamycin-sensitive regulation of the association of eukaryotic initiation factor 4E and the translational regulator PHAS-I in aortic smooth muscle cells.
    Proc Natl Acad Sci U S A. 1995 Aug 1;92(16):7222-6 PMID: 7638171
  23. A yeast gene required for DNA replication encodes a protein with homology to DNA helicases.
    Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7642-6 PMID: 7644470
  24. The rapamycin and FKBP12 target (RAFT) displays phosphatidylinositol 4-kinase activity.
    J Biol Chem. 1995 Sep 8;270(36):20875-8 PMID: 7673106
  25. When is a lipid kinase not a lipid kinase? When it is a protein kinase.
    Cell. 1995 Oct 6;83(1):1-4 PMID: 7553860
  26. PIK-related kinases: DNA repair, recombination, and cell cycle checkpoints.
    Science. 1995 Oct 6;270(5233):50-1 PMID: 7569949
  27. Effect of reversible inhibition of deoxyribonucleic acid synthesis on the yeast cell cycle.
    J Bacteriol. 1973 Jan;113(1):263-70 PMID: 4120066
  28. Saccharomyces cerevisiae cell cycle.
    Bacteriol Rev. 1974 Jun;38(2):164-98 PMID: 4599449
  29. Replacement of chromosome segments with altered DNA sequences constructed in vitro.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):4951-5 PMID: 388424
  30. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  31. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.
    EMBO J. 1982;1(8):945-51 PMID: 6329717
  32. DNA topoisomerase II is required at the time of mitosis in yeast.
    Cell. 1985 Jun;41(2):553-63 PMID: 2985283
  33. Altered fidelity of mitotic chromosome transmission in cell cycle mutants of S. cerevisiae.
    Genetics. 1985 Jul;110(3):381-95 PMID: 3894160
  34. A yeast mutant conditionally defective only for reentry into the mitotic cell cycle from stationary phase.
    Proc Natl Acad Sci U S A. 1987 Nov;84(22):7948-52 PMID: 3317397
  35. A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector.
    Gene. 1987;60(2-3):237-43 PMID: 3327750
  36. The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae.
    Science. 1988 Jul 15;241(4863):317-22 PMID: 3291120
  37. Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase.
    Gene. 1988 Jul 15;67(1):31-40 PMID: 3047011
  38. Role of neighbouring bases and assessment of strand specificity in ethylmethanesulphonate and N-methyl-N'-nitro-N-nitrosoguanidine mutagenesis in the SUP4-o gene of Saccharomyces cerevisiae.
    J Mol Biol. 1988 Dec 5;204(3):561-8 PMID: 3066906
  39. DNA topoisomerase II must act at mitosis to prevent nondisjunction and chromosome breakage.
    Mol Cell Biol. 1989 Jan;9(1):159-68 PMID: 2538717
  40. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
    Genetics. 1989 May;122(1):19-27 PMID: 2659436
  41. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes.
    Nucleic Acids Res. 1989 Jun 26;17(12):4713-30 PMID: 2546125
  42. Checkpoints: controls that ensure the order of cell cycle events.
    Science. 1989 Nov 3;246(4930):629-34 PMID: 2683079
  43. Protein phosphorylation controls translation rates.
    J Biol Chem. 1989 Dec 15;264(35):20823-6 PMID: 2687263
  44. Discontinuous DNA synthesis by purified mammalian proteins.
    J Biol Chem. 1990 Oct 25;265(30):18461-71 PMID: 2170412
  45. Basic local alignment search tool.
    J Mol Biol. 1990 Oct 5;215(3):403-10 PMID: 2231712
  46. Characterization of VPS34, a gene required for vacuolar protein sorting and vacuole segregation in Saccharomyces cerevisiae.
    Mol Cell Biol. 1990 Dec;10(12):6742-54 PMID: 2247081
  47. Chemistry and biology of the immunophilins and their immunosuppressive ligands.
    Science. 1991 Jan 18;251(4991):283-7 PMID: 1702904
  48. Phosphoinositide kinases.
    Biochemistry. 1990 Dec 25;29(51):11147-56 PMID: 2176895
  49. Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast.
    Methods Enzymol. 1991;194:281-301 PMID: 2005793
  50. In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast.
    Methods Enzymol. 1991;194:302-18 PMID: 2005795
  51. Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast.
    Science. 1991 Aug 23;253(5022):905-9 PMID: 1715094
  52. D-E-A-D protein family of putative RNA helicases.
    Mol Microbiol. 1992 Feb;6(3):283-91 PMID: 1552844
  53. Rapamycin-FKBP specifically blocks growth-dependent activation of and signaling by the 70 kd S6 protein kinases.
    Cell. 1992 Jun 26;69(7):1227-36 PMID: 1377606
  54. A Saccharomyces cerevisiae DNA helicase associated with replication factor C.
    J Biol Chem. 1992 Dec 15;267(35):25321-7 PMID: 1460028
  55. Rapamycin blocks cell cycle progression of activated T cells prior to events characteristic of the middle to late G1 phase of the cycle.
    J Cell Physiol. 1993 Jan;154(1):7-15 PMID: 8419408
  56. Three new DNA helicases from Saccharomyces cerevisiae.
    Chromosoma. 1992;102(1 Suppl):S93-9 PMID: 1337884
  57. Purification and characterization of DNA helicase III from the yeast Saccharomyces cerevisiae.
    J Biol Chem. 1993 May 5;268(13):9578-84 PMID: 8387501
  58. Target of rapamycin in yeast, TOR2, is an essential phosphatidylinositol kinase homolog required for G1 progression.
    Cell. 1993 May 7;73(3):585-96 PMID: 8387896
  59. Cell cycle arrest of cdc mutants and specificity of the RAD9 checkpoint.
    Genetics. 1993 May;134(1):63-80 PMID: 8514150
  60. Phosphatidylinositol 4-kinase: gene structure and requirement for yeast cell viability.
    Science. 1993 Nov 26;262(5138):1444-8 PMID: 8248783
  61. The saccharomyces PIF1 DNA helicase inhibits telomere elongation and de novo telomere formation.
    Cell. 1994 Jan 14;76(1):145-55 PMID: 8287473
  62. A novel gene, STT4, encodes a phosphatidylinositol 4-kinase in the PKC1 protein kinase pathway of Saccharomyces cerevisiae.
    J Biol Chem. 1994 Jan 14;269(2):1166-72 PMID: 8288577
  63. DNA helicases: enzymes with essential roles in all aspects of DNA metabolism.
    Bioessays. 1994 Jan;16(1):13-22 PMID: 8141804
  64. Characterization of a mutant strain of Saccharomyces cerevisiae with a deletion of the RAD27 gene, a structural homolog of the RAD2 nucleotide excision repair gene.
    J Bacteriol. 1995 Jan;177(2):364-71 PMID: 7814325
  65. Isolation of a protein target of the FKBP12-rapamycin complex in mammalian cells.
    J Biol Chem. 1995 Jan 13;270(2):815-22 PMID: 7822316
  66. Biochemical and genetic characterization of a replication protein A dependent DNA helicase from the yeast, Saccharomyces cerevisiae.
    Biochem Biophys Res Commun. 1995 Jan 26;206(3):850-6 PMID: 7832796
  67. Conditional lethality of null mutations in RTH1 that encodes the yeast counterpart of a mammalian 5'- to 3'-exonuclease required for lagging strand DNA synthesis in reconstituted systems.
    J Biol Chem. 1995 Mar 3;270(9):4193-6 PMID: 7876174
  68. DNA2 encodes a DNA helicase essential for replication of eukaryotic chromosomes.
    J Biol Chem. 1995 Nov 10;270(45):26766-9 PMID: 7592912
Article Info
Journal
Molecular biology of the cell
Abbr.
Mol Biol Cell
ISSN
1059-1524
Published
1997-12-00
Pages
2519-37
Language
English
Region
United States
NLM ID
9201390
PMCID
PMC25725
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]