Home LiteratureArticle Details
PMID: 9494109 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Molecular characterization of benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II of Acinetobacter calcoaceticus.

The Biochemical journal ·Vol. 330 ( Pt 3) ·1998-03-15 ·Pages 1375-81

Gillooly DJ, Robertson AG, Fewson CA

Abstract

The nucleotide sequences of xylB and xylC from Acinetobacter calcoaceticus, the genes encoding benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II, were determined. The complete nucleotide sequence indicates that these two genes form part of an operon and this was supported by heterologous expression and physiological studies. Benzaldehyde dehydrogenase II is a 51654 Da protein with 484 amino acids per subunit and it is typical of other prokaryotic and eukaryotic aldehyde dehydrogenases. Benzyl alcohol dehydrogenase has a subunit Mr of 38923 consisting of 370 amino acids, it stereospecifically transfers the proR hydride of NADH, and it is a member of the family of zinc-dependent long-chain alcohol dehydrogenases. The enzyme appears to be more similar to animal and higher-plant alcohol dehydrogenases than it is to most other microbial alcohol dehydrogenases. Residue His-51 of zinc-dependent alcohol dehydrogenases is thought to be necessary as a general base for catalysis in this category of alcohol dehydrogenases. However, this residue was found to be replaced in benzyl alcohol dehydrogenase from A. calcoaceticus by an isoleucine, and the introduction of a histidine residue in this position did not alter the kinetic coefficients, pH optimum or substrate specificity of the enzyme. Other workers have shown that His-51 is also absent from the TOL-plasmid-encoded benzyl alcohol dehydrogenase of Pseudomonas putida and so these two closely related enzymes presumably have a catalytic mechanism that differs from that of the archetypal zinc-dependent alcohol dehydrogenases.

MeSH Terms
Acinetobacter calcoaceticus/enzymology,genetics Alcohol Oxidoreductases/chemistry,genetics,metabolism Aldehyde Oxidoreductases/chemistry,genetics,metabolism Amino Acid Sequence Animals Base Sequence Genes, Bacterial Genomic Library Horses Kinetics Liver/enzymology Macromolecular Substances Molecular Sequence Data Molecular Weight Operon Phosphotransferases (Alcohol Group Acceptor)/biosynthesis,chemistry,genetics Plants/enzymology Recombinant Proteins/biosynthesis,chemistry,metabolism Sequence Alignment Sequence Homology, Amino Acid Substrate Specificity
Chemicals
Macromolecular Substances Recombinant Proteins Alcohol Oxidoreductases benzyl alcohol dehydrogenase Aldehyde Oxidoreductases benzaldehyde dehydrogenase (NAD+) Phosphotransferases (Alcohol Group Acceptor) xylulokinase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Gillooly D J
Division of Biochemistry and Molecular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G128QQ, U.K.
Robertson A G
Fewson C A
References (33)
33 references, click to expand
  1. Subunit conformation of yeast alcohol dehydrogenase.
    J Biol Chem. 1978 Dec 10;253(23):8414-9 PMID: 361742
  2. Kinetic studies on benzyl alcohol dehydrogenase encoded by TOL plasmid pWWO. A member of the zinc-containing long chain alcohol dehydrogenase family.
    J Biol Chem. 1993 May 25;268(15):10842-50 PMID: 8496150
  3. Binding of substrate in a ternary complex of horse liver alcohol dehydrogenase.
    J Biol Chem. 1982 Dec 10;257(23):14349-58 PMID: 6754727
  4. A computer algorithm for testing potential prokaryotic terminators.
    Nucleic Acids Res. 1984 May 25;12(10):4411-27 PMID: 6374619
  5. Crystallographic investigations of nicotinamide adenine dinucleotide binding to horse liver alcohol dehydrogenase.
    Biochemistry. 1984 Dec 4;23(25):5982-96 PMID: 6098306
  6. Physical and enzymatic properties of a class II alcohol dehydrogenase isozyme of human liver: pi-ADH.
    Biochemistry. 1984 Dec 18;23(26):6363-8 PMID: 6397223
  7. Benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II from Acinetobacter calcoaceticus. Purification and preliminary characterization.
    Biochem J. 1988 Mar 15;250(3):743-51 PMID: 3291854
  8. The growth and metabolic versatility of the gram-negative Bacterium NCIB 8250 ("Vibrio 01").
    J Gen Microbiol. 1967 Feb;46(2):255-66 PMID: 6029734
  9. Enhancement of the activity of horse liver alcohol dehydrogenase by modification of amino groups at the active sites.
    J Biol Chem. 1970 Apr 10;245(7):1727-35 PMID: 4314596
  10. Two benzaldehyde dehydrogenases in bacterium N.C.I.B. 8250. Distinguishing properties and regulation.
    Biochem J. 1972 Dec;130(4):927-35 PMID: 4656805
  11. Three-dimensional structure of horse liver alcohol dehydrogenase at 2-4 A resolution.
    J Mol Biol. 1976 Mar 25;102(1):27-59 PMID: 178875
  12. Regulation of growth of Acinetobacter calcoaceticus NCIB8250 on benzyl alcohol in batch culture.
    J Gen Microbiol. 1976 Oct;96(2):365-74 PMID: 993779
  13. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  14. A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions.
    Nucleic Acids Res. 1988 Aug 11;16(15):7351-67 PMID: 3045756
  15. Benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase II from Acinetobacter calcoaceticus. Substrate specificities and inhibition studies.
    Biochem J. 1988 Oct 15;255(2):653-61 PMID: 3060114
  16. The primary structure of Escherichia coli L-threonine dehydrogenase.
    J Biol Chem. 1989 Mar 25;264(9):5226-32 PMID: 2647748
  17. Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products.
    J Bacteriol. 1989 Sep;171(9):5048-55 PMID: 2549010
  18. Purification and characterisation of TOL plasmid-encoded benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase of Pseudomonas putida.
    Eur J Biochem. 1990 Aug 17;191(3):705-14 PMID: 2202600
  19. Comparison of three classes of human liver alcohol dehydrogenase. Emphasis on different substrate binding pockets.
    Eur J Biochem. 1990 Oct 24;193(2):303-10 PMID: 2226453
  20. The TOL plasmids: determinants of the catabolism of toluene and the xylenes.
    Adv Microb Physiol. 1990;31:1-69 PMID: 2264522
  21. Mandelate pathway of Pseudomonas putida: sequence relationships involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli.
    Biochemistry. 1990 Oct 23;29(42):9856-62 PMID: 2271624
  22. Comparison of benzyl alcohol dehydrogenases and benzaldehyde dehydrogenases from the benzyl alcohol and mandelate pathways in Acinetobacter calcoaceticus and from the TOL-plasmid-encoded toluene pathway in Pseudomonas putida. N-terminal amino acid sequences, amino acid compositions and immunological cross-reactions.
    Biochem J. 1991 Jan 1;273(Pt 1):99-107 PMID: 1989592
  23. Mechanistic and active-site studies on D(--)-mandelate dehydrogenase from Rhodotorula graminis.
    Biochem J. 1992 Jan 1;281 ( Pt 1):211-8 PMID: 1731758
  24. Cloning, sequencing, and expression of the DNA gyrase genes from Staphylococcus aureus.
    J Bacteriol. 1993 Jun;175(11):3269-77 PMID: 8388872
  25. Aldehyde dehydrogenases: widespread structural and functional diversity within a shared framework.
    Protein Sci. 1993 Nov;2(11):1890-900 PMID: 8268800
  26. Structures of horse liver alcohol dehydrogenase complexed with NAD+ and substituted benzyl alcohols.
    Biochemistry. 1994 May 3;33(17):5230-7 PMID: 8172897
  27. Molecular characterization of microbial alcohol dehydrogenases.
    Crit Rev Microbiol. 1994;20(1):13-56 PMID: 8185833
  28. The use of electrospray mass spectrometry to identify an essential arginine residue in type II dehydroquinases.
    FEBS Lett. 1995 Feb 20;360(1):93-6 PMID: 7875309
  29. Engineering yeast alcohol dehydrogenase. Replacing Trp54 by Leu broadens substrate specificity.
    Protein Eng. 1995 May;8(5):457-61 PMID: 8532667
  30. Site directed mutagenesis to probe for active site components of liver mitochondrial aldehyde dehydrogenase.
    Adv Exp Med Biol. 1995;372:1-7 PMID: 7484366
  31. Substrate-specificity of benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase encoded by TOL plasmid pWW0. Metabolic and mechanistic implications.
    Biochem J. 1992 May 1;283 ( Pt 3):789-94 PMID: 1590768
  32. Inversion of the substrate specificity of yeast alcohol dehydrogenase.
    J Biol Chem. 1993 Apr 15;268(11):7792-8 PMID: 8463307
  33. Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9 A resolution.
    J Mol Biol. 1981 Mar 15;146(4):561-87 PMID: 7024556
Article Info
Journal
The Biochemical journal
Abbr.
Biochem J
ISSN
0264-6021
Published
1998-03-15
Pages
1375-81
Language
English
Region
England
NLM ID
2984726R
PMCID
PMC1219285
Subset
IM
Databases
GENBANK
U61983
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]