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PMID: 9499062 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

A putative alpha-helical structure which overlaps the capsid-p2 boundary in the human immunodeficiency virus type 1 Gag precursor is crucial for viral particle assembly.

Journal of virology ·Vol. 72 ·No. 3 ·1998-03-00 ·Pages 2072-8

Accola MA, Höglund S, Göttlinger HG

Abstract

The capsid (CA) and nucleocapsid domains of the human immunodeficiency virus type 1 Gag polyprotein are separated by the p2 spacer peptide, which is essential for virus replication. Previous studies have revealed that p2 has an important role in virus morphogenesis. In this paper, we show that a crucial assembly determinant maps to the highly conserved N terminus of p2, which is predicted to form part of an alpha-helix that begins in CA. A mutational analysis indicates that the ability of the N terminus of p2 to adopt an alpha-helical structure is essential for its function during virus assembly. To prevent CA-p2 processing, it was necessary to mutate both the CA-p2 cleavage site and an internal cleavage site within p2. Virions produced by the double mutant lacked a conical core shell and instead contained a thin electron-dense shell about 10 nm underneath the virion membrane. These results suggest that p2 is transiently required for proper assembly, but needs to be removed from the C terminus of CA to weaken CA-CA interactions and allow the rearrangement of the virion core shell during virus maturation.

MeSH Terms
Amino Acid Sequence Capsid Chromosome Mapping Conserved Sequence Gene Products, gag/chemistry,genetics,metabolism HIV-1/genetics,physiology,ultrastructure HeLa Cells Humans Jurkat Cells Molecular Sequence Data Mutagenesis Peptide Fragments/chemistry,genetics,metabolism Protein Conformation Protein Precursors/chemistry,genetics,metabolism Structure-Activity Relationship Virion/ultrastructure Virus Assembly gag Gene Products, Human Immunodeficiency Virus
Chemicals
Gene Products, gag Peptide Fragments Protein Precursors gag Gene Products, Human Immunodeficiency Virus p2 gag peptide, Human immunodeficiency virus 1 p55 gag precursor protein, Human immunodeficiency virus 1
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Accola M A
Dana-Farber Cancer Institute, and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Höglund S
Göttlinger H G
References (49)
49 references, click to expand
  1. Immunoglobulin gene transcription is activated by downstream sequence elements.
    Cell. 1983 Jul;33(3):741-8 PMID: 6409419
  2. Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.
    Proteins. 1994 Dec;20(4):301-11 PMID: 7731949
  3. Differential proteolytic processing leads to multiple forms of the CA protein in avian sarcoma and leukemia viruses.
    J Virol. 1995 Oct;69(10):6430-8 PMID: 7666544
  4. Protein design: a hierarchic approach.
    Science. 1995 Nov 10;270(5238):935-41 PMID: 7481798
  5. Structure of the amino-terminal core domain of the HIV-1 capsid protein.
    Science. 1996 Jul 12;273(5272):231-5 PMID: 8662505
  6. The human immunodeficiency virus type 1 capsid p2 domain confers sensitivity to the cyclophilin-binding drug SDZ NIM 811.
    J Virol. 1996 Sep;70(9):5751-7 PMID: 8709190
  7. Crystal structure of dimeric HIV-1 capsid protein.
    Nat Struct Biol. 1996 Sep;3(9):763-70 PMID: 8784350
  8. Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid.
    Cell. 1996 Dec 27;87(7):1285-94 PMID: 8980234
  9. A direct comparison of helix propensity in proteins and peptides.
    Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):2833-7 PMID: 9096306
  10. Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein.
    Science. 1997 Oct 31;278(5339):849-53 PMID: 9346481
  11. In vitro assembly properties of purified bacterially expressed capsid proteins of human immunodeficiency virus.
    Eur J Biochem. 1997 Oct 15;249(2):592-600 PMID: 9370371
  12. Fine structure of human immunodeficiency virus (HIV) and immunolocalization of structural proteins.
    Virology. 1987 Jan;156(1):171-6 PMID: 3643678
  13. Chemical and immunological characterizations of equine infectious anemia virus gag-encoded proteins.
    J Virol. 1987 Apr;61(4):1116-24 PMID: 3029406
  14. Use of eukaryotic expression technology in the functional analysis of cloned genes.
    Methods Enzymol. 1987;152:684-704 PMID: 3657593
  15. Rapid and efficient site-specific mutagenesis without phenotypic selection.
    Methods Enzymol. 1987;154:367-82 PMID: 3323813
  16. Molecular characterization of gag proteins from simian immunodeficiency virus (SIVMne).
    J Virol. 1988 Aug;62(8):2587-95 PMID: 3292789
  17. The gag gene products of human immunodeficiency virus type 1: alignment within the gag open reading frame, identification of posttranslational modifications, and evidence for alternative gag precursors.
    J Virol. 1988 Nov;62(11):3993-4002 PMID: 3262776
  18. Unusually stable helix formation in short alanine-based peptides.
    Proc Natl Acad Sci U S A. 1989 Jul;86(14):5286-90 PMID: 2748584
  19. Role of capsid precursor processing and myristoylation in morphogenesis and infectivity of human immunodeficiency virus type 1.
    Proc Natl Acad Sci U S A. 1989 Aug;86(15):5781-5 PMID: 2788277
  20. Assembly and release of HIV-1 precursor Pr55gag virus-like particles from recombinant baculovirus-infected insect cells.
    Cell. 1989 Oct 6;59(1):103-12 PMID: 2676191
  21. Myristoylation-dependent replication and assembly of human immunodeficiency virus 1.
    Proc Natl Acad Sci U S A. 1990 Jan;87(2):523-7 PMID: 2405382
  22. Mutations of RNA and protein sequences involved in human immunodeficiency virus type 1 packaging result in production of noninfectious virus.
    J Virol. 1990 May;64(5):1920-6 PMID: 2109098
  23. Noninfectious human immunodeficiency virus type 1 mutants deficient in genomic RNA.
    J Virol. 1990 Jul;64(7):3207-11 PMID: 2191147
  24. Retroviral RNA packaging: sequence requirements and implications.
    Curr Top Microbiol Immunol. 1990;157:125-52 PMID: 2394131
  25. Effect of mutations affecting the p6 gag protein on human immunodeficiency virus particle release.
    Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):3195-9 PMID: 2014240
  26. Analysis of retroviral protease cleavage sites reveals two types of cleavage sites and the structural requirements of the P1 amino acid.
    J Biol Chem. 1991 Aug 5;266(22):14539-47 PMID: 1860860
  27. Spatial visualization of the maturing HIV-1 core and its linkage to the envelope.
    AIDS Res Hum Retroviruses. 1992 Jan;8(1):1-7 PMID: 1736937
  28. Gag proteins of the highly replicative MN strain of human immunodeficiency virus type 1: posttranslational modifications, proteolytic processings, and complete amino acid sequences.
    J Virol. 1992 Apr;66(4):1856-65 PMID: 1548743
  29. The matrix protein of human immunodeficiency virus type 1 is required for incorporation of viral envelope protein into mature virions.
    J Virol. 1992 Aug;66(8):4966-71 PMID: 1629961
  30. Identification of a region in the Pr55gag-polyprotein essential for HIV-1 particle formation.
    Virology. 1993 Apr;193(2):981-5 PMID: 8460500
  31. Identification of proteolytic processing sites within the Gag and Pol polyproteins of feline immunodeficiency virus.
    J Virol. 1993 Apr;67(4):1869-76 PMID: 8383214
  32. Structural basis of amino acid alpha helix propensity.
    Science. 1993 Jun 11;260(5114):1637-40 PMID: 8503008
  33. Assembly, processing, and infectivity of human immunodeficiency virus type 1 gag mutants.
    J Virol. 1993 Jul;67(7):4264-73 PMID: 7685414
  34. Prediction of protein secondary structure at better than 70% accuracy.
    J Mol Biol. 1993 Jul 20;232(2):584-99 PMID: 8345525
  35. Improved prediction of protein secondary structure by use of sequence profiles and neural networks.
    Proc Natl Acad Sci U S A. 1993 Aug 15;90(16):7558-62 PMID: 8356056
  36. Necessity of the spacer peptide between CA and NC in the Rous sarcoma virus gag protein.
    J Virol. 1993 Oct;67(10):6246-52 PMID: 8396679
  37. Human immunodeficiency virus type 1 viral protein R localization in infected cells and virions.
    J Virol. 1993 Nov;67(11):6542-50 PMID: 8411357
  38. Incorporation of Vpr into human immunodeficiency virus type 1 virions: requirement for the p6 region of gag and mutational analysis.
    J Virol. 1993 Dec;67(12):7229-37 PMID: 8230445
  39. Role of the matrix protein in the virion association of the human immunodeficiency virus type 1 envelope glycoprotein.
    J Virol. 1994 Mar;68(3):1689-96 PMID: 8107229
  40. Role of the major homology region of human immunodeficiency virus type 1 in virion morphogenesis.
    J Virol. 1994 Aug;68(8):4927-36 PMID: 8035491
  41. Specificity and sequence requirements for interactions between various retroviral Gag proteins.
    J Virol. 1994 Aug;68(8):5300-5 PMID: 8035530
  42. Combining evolutionary information and neural networks to predict protein secondary structure.
    Proteins. 1994 May;19(1):55-72 PMID: 8066087
  43. Amino acid sequence analysis of the proteolytic cleavage products of the bovine immunodeficiency virus Gag precursor polypeptide.
    J Virol. 1994 Nov;68(11):7620-7 PMID: 7933153
  44. The p2 domain of human immunodeficiency virus type 1 Gag regulates sequential proteolytic processing and is required to produce fully infectious virions.
    J Virol. 1994 Dec;68(12):8017-27 PMID: 7966591
  45. Functional domains of the capsid protein of human immunodeficiency virus type 1.
    J Virol. 1994 Dec;68(12):8180-7 PMID: 7966609
  46. Specific incorporation of cyclophilin A into HIV-1 virions.
    Nature. 1994 Nov 24;372(6504):359-62 PMID: 7969494
  47. Functional association of cyclophilin A with HIV-1 virions.
    Nature. 1994 Nov 24;372(6504):363-5 PMID: 7969495
  48. Linker insertion mutations in the human immunodeficiency virus type 1 gag gene: effects on virion particle assembly, release, and infectivity.
    J Virol. 1995 Feb;69(2):642-50 PMID: 7815527
  49. The spacer peptide between human immunodeficiency virus capsid and nucleocapsid proteins is essential for ordered assembly and viral infectivity.
    J Virol. 1995 Jun;69(6):3407-19 PMID: 7745687
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1998-03-00
Pages
2072-8
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC109501
Subset
IM
Grants
NIAID NIH HHS · R37 AI029873 · United States
NIAID NIH HHS · P30 AI028691 · United States
NIAID NIH HHS · AI29873 · United States
NCI NIH HHS · T32 CA009141 · United States
NIAID NIH HHS · AI28691 · United States
NCI NIH HHS · T32 CA09141 · United States
NIAID NIH HHS · R01 AI029873 · United States
NCI NIH HHS · P30 CA006516 · United States
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