Home LiteratureArticle Details
PMID: 9533920 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude.

Journal of magnetic resonance (San Diego, Calif. : 1997) ·Vol. 131 ·No. 1 ·1998-03-00 ·Pages 159-62

Clore GM, Gronenborn AM, Tjandra N

Abstract

Residual dipolar couplings arising from small degrees of alignment of molecules in a magnetic field provide unique long-range structural information. The potential of this approach for structure refinement has recently been demonstrated for a protein-DNA complex in which the magnetic susceptibility tensor was axially symmetric. For most macromolecules and macromolecular complexes, however, axial symmetry cannot be assumed. Moreover, the presence of significant rhombicity will clearly affect the accuracy of the resulting coordinates. In this Communication we present a simple calculational strategy that makes use of simulated annealing refinement against the residual dipolar couplings in combination with a grid search, to simultaneously refine the structures and ascertain the magnitude of the axial and rhombic components of the tensor.

MeSH Terms
Algorithms Carbon/chemistry DNA/chemistry Hydrogen/chemistry Macromolecular Substances Magnetics Nitrogen/chemistry Nuclear Magnetic Resonance, Biomolecular/methods Protein Conformation Proteins/chemistry Reproducibility of Results
Chemicals
Macromolecular Substances Proteins Carbon Hydrogen DNA Nitrogen
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Clore G M
National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Building 5, Bethesda, Maryland 20892-0520, USA.
Gronenborn A M
Tjandra N
Article Info
Journal
Journal of magnetic resonance (San Diego, Calif. : 1997)
Abbr.
J Magn Reson
ISSN
1090-7807
Published
1998-03-00
Pages
159-62
Language
English
Region
United States
NLM ID
9707935
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]