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PMID: 9808622 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Structure and specificity of nuclear receptor-coactivator interactions.

Genes & development ·Vol. 12 ·No. 21 ·1998-11-01 ·Pages 3343-56

Darimont BD, Wagner RL, Apriletti JW, Stallcup MR, Kushner PJ, Baxter JD, Fletterick RJ, Yamamoto KR

Abstract

Combinatorial regulation of transcription implies flexible yet precise assembly of multiprotein regulatory complexes in response to signals. Biochemical and crystallographic analyses revealed that hormone binding leads to the formation of a hydrophobic groove within the ligand binding domain (LBD) of the thyroid hormone receptor that interacts with an LxxLL motif-containing alpha-helix from GRIP1, a coactivator. Residues immediately adjacent to the motif modulate the affinity of the interaction; the motif and the adjacent sequences are employed to different extents in binding to different receptors. Such interactions of amphipathic alpha-helices with hydrophobic grooves define protein interfaces in other regulatory complexes as well. We suggest that these common structural elements impart flexibility to combinatorial regulation, whereas side chains at the interface impart specificity.

MeSH Terms
Amino Acid Sequence Binding, Competitive Crystallography, X-Ray Gene Expression Regulation Models, Molecular Molecular Sequence Data Nuclear Receptor Coactivator 2 Peptide Fragments/chemistry,genetics,metabolism Protein Structure, Secondary Protein Structure, Tertiary Receptors, Cytoplasmic and Nuclear/chemistry,genetics,metabolism Receptors, Glucocorticoid/chemistry,genetics,metabolism Receptors, Thyroid Hormone/chemistry,genetics,metabolism Transcription Factors/metabolism,physiology Transcriptional Activation
Chemicals
Nuclear Receptor Coactivator 2 Peptide Fragments Receptors, Cytoplasmic and Nuclear Receptors, Glucocorticoid Receptors, Thyroid Hormone Transcription Factors
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Darimont B D
Department of Cellular and Molecular Pharmacology, University of California at San Francisco (UCSF), San Francisco, California 94143 USA.
Wagner R L
Apriletti J W
Stallcup M R
Kushner P J
Baxter J D
Fletterick R J
Yamamoto K R
References (51)
51 references, click to expand
  1. A canonical structure for the ligand-binding domain of nuclear receptors.
    Nat Struct Biol. 1996 Jan;3(1):87-94 PMID: 8548460
  2. Hormone-dependent coactivator binding to a hydrophobic cleft on nuclear receptors.
    Science. 1998 Jun 12;280(5370):1747-9 PMID: 9624051
  3. Stimulation of E2F1/DP1 transcriptional activity by MDM2 oncoprotein.
    Nature. 1995 Jun 22;375(6533):691-4 PMID: 7791903
  4. Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement.
    Proc Natl Acad Sci U S A. 1997 May 13;94(10):5018-23 PMID: 9144182
  5. Crystal structure of the RAR-gamma ligand-binding domain bound to all-trans retinoic acid.
    Nature. 1995 Dec 14;378(6558):681-9 PMID: 7501014
  6. The coactivator TIF2 contains three nuclear receptor-binding motifs and mediates transactivation through CBP binding-dependent and -independent pathways.
    EMBO J. 1998 Jan 15;17(2):507-19 PMID: 9430642
  7. Human TAFII31 protein is a transcriptional coactivator of the p53 protein.
    Proc Natl Acad Sci U S A. 1995 May 23;92(11):5154-8 PMID: 7761466
  8. Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB: a model for activator:coactivator interactions.
    Cell. 1997 Dec 12;91(6):741-52 PMID: 9413984
  9. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.
    Proteins. 1991;11(4):281-96 PMID: 1758883
  10. A signature motif in transcriptional co-activators mediates binding to nuclear receptors.
    Nature. 1997 Jun 12;387(6634):733-6 PMID: 9192902
  11. A nuclear receptor corepressor modulates transcriptional activity of antagonist-occupied steroid hormone receptor.
    Mol Endocrinol. 1998 Apr;12(4):513-24 PMID: 9544987
  12. Atomic structure of progesterone complexed with its receptor.
    Nature. 1998 May 28;393(6683):392-6 PMID: 9620806
  13. Activation function 2 (AF-2) of retinoic acid receptor and 9-cis retinoic acid receptor: presence of a conserved autonomous constitutive activating domain and influence of the nature of the response element on AF-2 activity.
    EMBO J. 1994 Nov 15;13(22):5370-82 PMID: 7957103
  14. Mutations in the conserved C-terminal sequence in thyroid hormone receptor dissociate hormone-dependent activation from interference with AP-1 activity.
    Mol Cell Biol. 1997 Aug;17(8):4687-95 PMID: 9234725
  15. Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain.
    Science. 1996 Nov 8;274(5289):948-53 PMID: 8875929
  16. Functional analysis of a transactivation domain in the thyroid hormone beta receptor.
    J Biol Chem. 1994 Dec 9;269(49):31157-61 PMID: 7983057
  17. Identification of a conserved region required for hormone dependent transcriptional activation by steroid hormone receptors.
    EMBO J. 1992 Mar;11(3):1025-33 PMID: 1372244
  18. Sequence and characterization of a coactivator for the steroid hormone receptor superfamily.
    Science. 1995 Nov 24;270(5240):1354-7 PMID: 7481822
  19. AF-2 activity and recruitment of steroid receptor coactivator 1 to the estrogen receptor depend on a lysine residue conserved in nuclear receptors.
    Mol Cell Biol. 1997 Apr;17(4):1832-9 PMID: 9121431
  20. Ligand-regulated nonspecific inactivation of receptor function: a versatile mechanism for signal transduction.
    Cold Spring Harb Symp Quant Biol. 1988;53 Pt 2:803-11 PMID: 3076098
  21. Isoforms of steroid receptor co-activator 1 differ in their ability to potentiate transcription by the oestrogen receptor.
    EMBO J. 1998 Jan 2;17(1):232-43 PMID: 9427757
  22. Expression of the rat alpha 1 thyroid hormone receptor ligand binding domain in Escherichia coli and the use of a ligand-induced conformation change as a method for its purification to homogeneity.
    Protein Expr Purif. 1995 Jun;6(3):363-70 PMID: 7663174
  23. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  24. Evidence for ligand-dependent intramolecular folding of the AF-2 domain in vitamin D receptor-activated transcription and coactivator interaction.
    Mol Endocrinol. 1997 Sep;11(10):1507-17 PMID: 9280066
  25. GRIP1, a novel mouse protein that serves as a transcriptional coactivator in yeast for the hormone binding domains of steroid receptors.
    Proc Natl Acad Sci U S A. 1996 May 14;93(10):4948-52 PMID: 8643509
  26. A structural role for hormone in the thyroid hormone receptor.
    Nature. 1995 Dec 14;378(6558):690-7 PMID: 7501015
  27. Nuclear receptor coactivators.
    Curr Opin Cell Biol. 1997 Apr;9(2):222-32 PMID: 9069256
  28. AIB1, a steroid receptor coactivator amplified in breast and ovarian cancer.
    Science. 1997 Aug 15;277(5328):965-8 PMID: 9252329
  29. Induced alpha helix in the VP16 activation domain upon binding to a human TAF.
    Science. 1997 Aug 29;277(5330):1310-3 PMID: 9271577
  30. Molecular basis of agonism and antagonism in the oestrogen receptor.
    Nature. 1997 Oct 16;389(6652):753-8 PMID: 9338790
  31. p53 transcriptional activation mediated by coactivators TAFII40 and TAFII60.
    Science. 1995 Jan 6;267(5194):100-4 PMID: 7809597
  32. Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reaction.
    Biochem Pharmacol. 1973 Dec 1;22(23):3099-108 PMID: 4202581
  33. A CBP integrator complex mediates transcriptional activation and AP-1 inhibition by nuclear receptors.
    Cell. 1996 May 3;85(3):403-14 PMID: 8616895
  34. Mutations in the 1,25-dihydroxyvitamin D3 receptor identifying C-terminal amino acids required for transcriptional activation that are functionally dissociated from hormone binding, heterodimeric DNA binding, and interaction with basal transcription factor IIB, in vitro.
    J Biol Chem. 1997 Jun 6;272(23):14592-9 PMID: 9169418
  35. Ligand binding and co-activator assembly of the peroxisome proliferator-activated receptor-gamma.
    Nature. 1998 Sep 10;395(6698):137-43 PMID: 9744270
  36. Enhancement of estrogen receptor transcriptional activity by the coactivator GRIP-1 highlights the role of activation function 2 in determining estrogen receptor pharmacology.
    J Biol Chem. 1998 Mar 20;273(12):6679-88 PMID: 9506965
  37. The nuclear corepressors NCoR and SMRT are key regulators of both ligand- and 8-bromo-cyclic AMP-dependent transcriptional activity of the human progesterone receptor.
    Mol Cell Biol. 1998 Mar;18(3):1369-78 PMID: 9488452
  38. RAC3, a steroid/nuclear receptor-associated coactivator that is related to SRC-1 and TIF2.
    Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8479-84 PMID: 9238002
  39. TIF2, a 160 kDa transcriptional mediator for the ligand-dependent activation function AF-2 of nuclear receptors.
    EMBO J. 1996 Jul 15;15(14):3667-75 PMID: 8670870
  40. GRIP1, a transcriptional coactivator for the AF-2 transactivation domain of steroid, thyroid, retinoid, and vitamin D receptors.
    Mol Cell Biol. 1997 May;17(5):2735-44 PMID: 9111344
  41. Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300.
    Cell. 1997 Aug 8;90(3):569-80 PMID: 9267036
  42. The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3 PMID: 15299374
  43. The nuclear receptor ligand-binding domain: structure and function.
    Curr Opin Cell Biol. 1998 Jun;10(3):384-91 PMID: 9640540
  44. Characterization of the ligand-dependent transactivation domain of thyroid hormone receptor.
    EMBO J. 1994 Jul 1;13(13):3039-49 PMID: 8039499
  45. The transcriptional co-activator p/CIP binds CBP and mediates nuclear-receptor function.
    Nature. 1997 Jun 12;387(6634):677-84 PMID: 9192892
  46. Nuclear receptor-binding sites of coactivators glucocorticoid receptor interacting protein 1 (GRIP1) and steroid receptor coactivator 1 (SRC-1): multiple motifs with different binding specificities.
    Mol Endocrinol. 1998 Feb;12(2):302-13 PMID: 9482670
  47. A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors.
    EMBO J. 1996 Dec 2;15(23):6701-15 PMID: 8978696
  48. TRAM-1, A novel 160-kDa thyroid hormone receptor activator molecule, exhibits distinct properties from steroid receptor coactivator-1.
    J Biol Chem. 1997 Oct 31;272(44):27629-34 PMID: 9346901
  49. Crystal structure of the ligand-binding domain of the human nuclear receptor RXR-alpha.
    Nature. 1995 Jun 1;375(6530):377-82 PMID: 7760929
  50. Combining evolutionary information and neural networks to predict protein secondary structure.
    Proteins. 1994 May;19(1):55-72 PMID: 8066087
  51. A natural transactivation mutation in the thyroid hormone beta receptor: impaired interaction with putative transcriptional mediators.
    Proc Natl Acad Sci U S A. 1997 Jan 7;94(1):248-53 PMID: 8990194
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
1998-11-01
Pages
3343-56
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC317236
Subset
IM
Databases
PDB
Analysis Services
Analysis Services

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