Home LiteratureArticle Details
PMID: 10385629 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34.

Genes & development ·Vol. 13 ·No. 12 ·1999-06-15 ·Pages 1614-26

Seol JH, Feldman RM, Zachariae W, Shevchenko A, Correll CC, Lyapina S, Chi Y, Galova M, Claypool J, Sandmeyer S, Nasmyth K, Deshaies RJ, Shevchenko A, Deshaies RJ

Abstract

SCFCdc4 (Skp1, Cdc53/cullin, F-box protein) defines a family of modular ubiquitin ligases (E3s) that regulate diverse processes including cell cycle, immune response, and development. Mass spectrometric analysis of proteins copurifying with Cdc53 identified the RING-H2 finger protein Hrt1 as a subunit of SCF. Hrt1 shows striking similarity to the Apc11 subunit of anaphase-promoting complex. Conditional inactivation of hrt1(ts) results in stabilization of the SCFCdc4 substrates Sic1 and Cln2 and cell cycle arrest at G1/S. Hrt1 assembles into recombinant SCF complexes and individually binds Cdc4, Cdc53 and Cdc34, but not Skp1. Hrt1 stimulates the E3 activity of recombinant SCF potently and enables the reconstitution of Cln2 ubiquitination by recombinant SCFGrr1. Surprisingly, SCF and the Cdc53/Hrt1 subcomplex activate autoubiquitination of Cdc34 E2 enzyme by a mechanism that does not appear to require a reactive thiol. The highly conserved human HRT1 complements the lethality of hrt1Delta, and human HRT2 binds CUL-1. We conclude that Cdc53/Hrt1 comprise a highly conserved module that serves as the functional core of a broad variety of heteromeric ubiquitin ligases.

MeSH Terms
Amino Acid Sequence Anaphase-Promoting Complex-Cyclosome Animals Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome Basic Helix-Loop-Helix Transcription Factors Binding Sites Cell Cycle Proteins/genetics,isolation & purification,metabolism Cullin Proteins Enzyme Activation F-Box Proteins F-Box-WD Repeat-Containing Protein 7 Humans Ligases/metabolism Molecular Sequence Data Recombinant Fusion Proteins/metabolism S-Phase Kinase-Associated Proteins SKP Cullin F-Box Protein Ligases Saccharomyces cerevisiae Proteins Tripeptidyl-Peptidase 1 Ubiquitin-Conjugating Enzymes Ubiquitin-Protein Ligase Complexes Ubiquitin-Protein Ligases Ubiquitins/metabolism
Chemicals
Basic Helix-Loop-Helix Transcription Factors Cdc53 protein, S cerevisiae Cell Cycle Proteins Cullin Proteins F-Box Proteins F-Box-WD Repeat-Containing Protein 7 FBXW7 protein, human HEY1 protein, human Recombinant Fusion Proteins S-Phase Kinase-Associated Proteins Saccharomyces cerevisiae Proteins Tripeptidyl-Peptidase 1 Ubiquitins CDC34 protein, S cerevisiae CDC34 protein, human Ubiquitin-Conjugating Enzymes Ubiquitin-Protein Ligase Complexes ANAPC11 protein, human Anaphase-Promoting Complex-Cyclosome Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome HRT1 protein, S cerevisiae SKP Cullin F-Box Protein Ligases Ubiquitin-Protein Ligases TPP1 protein, human Ligases
Authors & Affiliations
14 authors, click to expand affiliations / ORCID
Seol J H
Division of Biology, California Institute of Technology, Pasadena, California 91125, USA.
Feldman R M
Zachariae W
Shevchenko A
Correll C C
Lyapina S
Chi Y
Galova M
Claypool J
Sandmeyer S
Nasmyth K
Deshaies R J
Shevchenko A
Deshaies R J
References (53)
53 references, click to expand
  1. Components of ubiquitin-protein ligase system. Resolution, affinity purification, and role in protein breakdown.
    J Biol Chem. 1983 Jul 10;258(13):8206-14 PMID: 6305978
  2. Cdc53 targets phosphorylated G1 cyclins for degradation by the ubiquitin proteolytic pathway.
    Cell. 1996 Aug 9;86(3):453-63 PMID: 8756727
  3. The recognition component of the N-end rule pathway.
    EMBO J. 1990 Oct;9(10):3179-89 PMID: 2209542
  4. A general approach to the isolation of cell cycle-regulated genes in the budding yeast, Saccharomyces cerevisiae.
    J Mol Biol. 1991 Apr 5;218(3):543-56 PMID: 2016745
  5. A potential positive feedback loop controlling CLN1 and CLN2 gene expression at the start of the yeast cell cycle.
    Cell. 1991 May 31;65(5):875-83 PMID: 2040016
  6. How proteolysis drives the cell cycle.
    Science. 1996 Dec 6;274(5293):1652-9 PMID: 8939846
  7. Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels.
    Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14440-5 PMID: 8962070
  8. Role of 26S proteasome and HRD genes in the degradation of 3-hydroxy-3-methylglutaryl-CoA reductase, an integral endoplasmic reticulum membrane protein.
    Mol Biol Cell. 1996 Dec;7(12):2029-44 PMID: 8970163
  9. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  10. SIC1 is ubiquitinated in vitro by a pathway that requires CDC4, CDC34, and cyclin/CDK activities.
    Mol Biol Cell. 1997 Aug;8(8):1427-37 PMID: 9285816
  11. Yeast Hct1 is a regulator of Clb2 cyclin proteolysis.
    Cell. 1997 Aug 22;90(4):683-93 PMID: 9288748
  12. Phosphorylation of Sic1p by G1 Cdk required for its degradation and entry into S phase.
    Science. 1997 Oct 17;278(5337):455-60 PMID: 9334303
  13. CDC20 and CDH1: a family of substrate-specific activators of APC-dependent proteolysis.
    Science. 1997 Oct 17;278(5337):460-3 PMID: 9334304
  14. F-box proteins are receptors that recruit phosphorylated substrates to the SCF ubiquitin-ligase complex.
    Cell. 1997 Oct 17;91(2):209-19 PMID: 9346238
  15. A complex of Cdc4p, Skp1p, and Cdc53p/cullin catalyzes ubiquitination of the phosphorylated CDK inhibitor Sic1p.
    Cell. 1997 Oct 17;91(2):221-30 PMID: 9346239
  16. Der3p/Hrd1p is required for endoplasmic reticulum-associated degradation of misfolded lumenal and integral membrane proteins.
    Mol Biol Cell. 1998 Jan;9(1):209-22 PMID: 9437001
  17. The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p.
    Genes Dev. 1998 Jan 15;12(2):198-207 PMID: 9436980
  18. Oncoprotein MDM2 is a ubiquitin ligase E3 for tumor suppressor p53.
    FEBS Lett. 1997 Dec 22;420(1):25-7 PMID: 9450543
  19. Regulation of the Hedgehog and Wingless signalling pathways by the F-box/WD40-repeat protein Slimb.
    Nature. 1998 Jan 29;391(6666):493-6 PMID: 9461217
  20. Mass spectrometric analysis of the anaphase-promoting complex from yeast: identification of a subunit related to cullins.
    Science. 1998 Feb 20;279(5354):1216-9 PMID: 9469814
  21. Identification of a cullin homology region in a subunit of the anaphase-promoting complex.
    Science. 1998 Feb 20;279(5354):1219-22 PMID: 9469815
  22. Cdc53 is a scaffold protein for multiple Cdc34/Skp1/F-box proteincomplexes that regulate cell division and methionine biosynthesis in yeast.
    Genes Dev. 1998 Mar 1;12(5):692-705 PMID: 9499404
  23. Combinatorial control in ubiquitin-dependent proteolysis: don't Skp the F-box hypothesis.
    Trends Genet. 1998 Jun;14(6):236-43 PMID: 9635407
  24. The mouse and human genes encoding the recognition component of the N-end rule pathway.
    Proc Natl Acad Sci U S A. 1998 Jul 7;95(14):7898-903 PMID: 9653112
  25. Direct binding of CDC20 protein family members activates the anaphase-promoting complex in mitosis and G1.
    Mol Cell. 1998 Aug;2(2):163-71 PMID: 9734353
  26. Identification of a portable determinant of cell cycle function within the carboxyl-terminal domain of the yeast CDC34 (UBC3) ubiquitin conjugating (E2) enzyme.
    EMBO J. 1992 Aug;11(8):3081-90 PMID: 1639075
  27. CLB5: a novel B cyclin from budding yeast with a role in S phase.
    Genes Dev. 1992 Sep;6(9):1695-706 PMID: 1387626
  28. The bacterially expressed yeast CDC34 gene product can undergo autoubiquitination to form a multiubiquitin chain-linked protein.
    J Biol Chem. 1993 Mar 15;268(8):5668-75 PMID: 8383676
  29. CLB5 and CLB6, a new pair of B cyclins involved in DNA replication in Saccharomyces cerevisiae.
    Genes Dev. 1993 Jul;7(7A):1160-75 PMID: 8319908
  30. The Ubc3 (Cdc34) ubiquitin-conjugating enzyme is ubiquitinated and phosphorylated in vivo.
    Mol Cell Biol. 1994 May;14(5):3022-9 PMID: 8164658
  31. The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae.
    Cell. 1994 Oct 21;79(2):233-44 PMID: 7954792
  32. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res. 1994 Nov 11;22(22):4673-80 PMID: 7984417
  33. Protein ubiquitination involving an E1-E2-E3 enzyme ubiquitin thioester cascade.
    Nature. 1995 Jan 5;373(6509):81-3 PMID: 7800044
  34. Regulated degradation of the transcription factor Gcn4.
    EMBO J. 1994 Dec 15;13(24):6021-30 PMID: 7813440
  35. Ubiquitination of the G1 cyclin Cln2p by a Cdc34p-dependent pathway.
    EMBO J. 1995 Jan 16;14(2):303-12 PMID: 7835341
  36. Error-tolerant identification of peptides in sequence databases by peptide sequence tags.
    Anal Chem. 1994 Dec 15;66(24):4390-9 PMID: 7847635
  37. G1 cyclin turnover and nutrient uptake are controlled by a common pathway in yeast.
    Genes Dev. 1995 Feb 15;9(4):399-409 PMID: 7883165
  38. Identification of the receptor component of the IkappaBalpha-ubiquitin ligase.
    Nature. 1998 Dec 10;396(6711):590-4 PMID: 9859996
  39. Siah-1 N-terminal RING domain is required for proteolysis function, and C-terminal sequences regulate oligomerization and binding to target proteins.
    Mol Cell Biol. 1999 Jan;19(1):724-32 PMID: 9858595
  40. The Elongin BC complex interacts with the conserved SOCS-box motif present in members of the SOCS, ras, WD-40 repeat, and ankyrin repeat families.
    Genes Dev. 1998 Dec 15;12(24):3872-81 PMID: 9869640
  41. Rbx1, a component of the VHL tumor suppressor complex and SCF ubiquitin ligase.
    Science. 1999 Apr 23;284(5414):657-61 PMID: 10213691
  42. Reconstitution of G1 cyclin ubiquitination with complexes containing SCFGrr1 and Rbx1.
    Science. 1999 Apr 23;284(5414):662-5 PMID: 10213692
  43. Recruitment of a ROC1-CUL1 ubiquitin ligase by Skp1 and HOS to catalyze the ubiquitination of I kappa B alpha.
    Mol Cell. 1999 Apr;3(4):527-33 PMID: 10230406
  44. ROC1, a homolog of APC11, represents a family of cullin partners with an associated ubiquitin ligase activity.
    Mol Cell. 1999 Apr;3(4):535-41 PMID: 10230407
  45. A family of proteins structurally and functionally related to the E6-AP ubiquitin-protein ligase.
    Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):2563-7 PMID: 7708685
  46. A 20S complex containing CDC27 and CDC16 catalyzes the mitosis-specific conjugation of ubiquitin to cyclin B.
    Cell. 1995 Apr 21;81(2):279-88 PMID: 7736580
  47. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry.
    Nature. 1996 Feb 1;379(6564):466-9 PMID: 8559255
  48. Analytical properties of the nanoelectrospray ion source.
    Anal Chem. 1996 Jan 1;68(1):1-8 PMID: 8779426
  49. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.
    Anal Chem. 1996 Mar 1;68(5):850-8 PMID: 8779443
  50. cul-1 is required for cell cycle exit in C. elegans and identifies a novel gene family.
    Cell. 1996 Jun 14;85(6):829-39 PMID: 8681378
  51. Does this have a familiar RING?
    Trends Biochem Sci. 1996 Jun;21(6):208-14 PMID: 8744354
  52. SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box.
    Cell. 1996 Jul 26;86(2):263-74 PMID: 8706131
  53. Contributions of mass spectrometry to peptide and protein structure.
    Biomed Environ Mass Spectrom. 1988 Oct;16(1-12):99-111 PMID: 3072035
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
1999-06-15
Pages
1614-26
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC316801
Subset
IM
Grants
Wellcome Trust · United Kingdom
NIGMS NIH HHS · GM52466-01 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]