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PMID: 10521393 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

TFIID-specific yeast TAF40 is essential for the majority of RNA polymerase II-mediated transcription in vivo.

Genes & development ·Vol. 13 ·No. 19 ·1999-10-01 ·Pages 2484-9

Komarnitsky PB, Michel B, Buratowski S

Abstract

Many questions remain concerning the role of TFIID TBP-associated factors (TAFs) in transcription, including whether TAFs are required at most or only a small subset of promoters. It was shown previously that three histone-like TAFs are broadly required for transcription, but interpretation of this observation is complicated because these proteins are components of both TFIID and the SAGA histone acetyltransferase complex. Here we show that mutations in the yeast TFIID-specific protein Taf40 lead to a general cessation of transcription, even in the presence of excess TBP, suggesting that the TFIID complex is required at most promoters in vivo.

MeSH Terms
DNA-Binding Proteins/genetics,metabolism Gene Expression Mutagenesis RNA Polymerase II/metabolism Saccharomyces cerevisiae Proteins TATA-Binding Protein Associated Factors TATA-Box Binding Protein Temperature Transcription Factor TFIID Transcription Factors/genetics,metabolism Transcription Factors, TFII/metabolism Transcription, Genetic Yeasts/genetics
Chemicals
DNA-Binding Proteins Saccharomyces cerevisiae Proteins TAF11 protein, S cerevisiae TATA-Binding Protein Associated Factors TATA-Box Binding Protein Transcription Factor TFIID Transcription Factors Transcription Factors, TFII RNA Polymerase II
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Komarnitsky P B
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Michel B
Buratowski S
References (41)
41 references, click to expand
  1. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells.
    Cell. 1992 May 15;69(4):685-96 PMID: 1586947
  2. TAF25p, a non-histone-like subunit of TFIID and SAGA complexes, is essential for total mRNA gene transcription in vivo.
    J Biol Chem. 1999 Jul 2;274(27):18847-50 PMID: 10383379
  3. An ATP-dependent inhibitor of TBP binding to DNA.
    Genes Dev. 1993 May;7(5):844-56 PMID: 8491381
  4. TBP, a universal eukaryotic transcription factor?
    Genes Dev. 1993 Jul;7(7B):1291-308 PMID: 8330735
  5. Identification of TFIID components required for transcriptional activation by upstream stimulatory factor.
    J Biol Chem. 1993 Aug 15;268(23):17554-8 PMID: 8349634
  6. An RNA polymerase II holoenzyme responsive to activators.
    Nature. 1994 Mar 31;368(6470):466-9 PMID: 8133894
  7. Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA-box binding.
    Proc Natl Acad Sci U S A. 1994 Apr 26;91(9):3520-4 PMID: 8170939
  8. A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.
    Cell. 1994 May 20;77(4):599-608 PMID: 8187178
  9. Assembly of recombinant TFIID reveals differential coactivator requirements for distinct transcriptional activators.
    Cell. 1994 Oct 7;79(1):93-105 PMID: 7923382
  10. Yeast TAFIIS in a multisubunit complex required for activated transcription.
    Nature. 1994 Oct 6;371(6497):523-7 PMID: 7935765
  11. General requirement for RNA polymerase II holoenzymes in vivo.
    Proc Natl Acad Sci U S A. 1995 May 9;92(10):4587-90 PMID: 7753848
  12. TAFII250 is a bipartite protein kinase that phosphorylates the base transcription factor RAP74.
    Cell. 1996 Mar 8;84(5):781-90 PMID: 8625415
  13. Transcription activation in cells lacking TAFIIS.
    Nature. 1996 Sep 12;383(6596):185-8 PMID: 8774886
  14. TBP-associated factors are not generally required for transcriptional activation in yeast.
    Nature. 1996 Sep 12;383(6596):188-91 PMID: 8774887
  15. TAFs mediate transcriptional activation and promoter selectivity.
    Trends Biochem Sci. 1996 Sep;21(9):338-42 PMID: 8870497
  16. Yeast homologues of higher eukaryotic TFIID subunits.
    Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14654-8 PMID: 8962109
  17. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity.
    Cell. 1996 Dec 27;87(7):1261-70 PMID: 8980232
  18. Cloning and characterization of an essential Saccharomyces cerevisiae gene, TAF40, which encodes yTAFII40, an RNA polymerase II-specific TATA-binding protein-associated factor.
    J Biol Chem. 1997 Apr 4;272(14):9436-42 PMID: 9083082
  19. Structure-function analysis of TAF130: identification and characterization of a high-affinity TATA-binding protein interaction domain in the N terminus of yeast TAF(II)130.
    Mol Cell Biol. 1997 Jun;17(6):3081-93 PMID: 9154807
  20. Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions?
    Proc Natl Acad Sci U S A. 1997 Aug 19;94(17):8928-35 PMID: 9256411
  21. Transcriptional activation independent of TFIIH kinase and the RNA polymerase II mediator in vivo.
    Nature. 1998 May 28;393(6683):389-92 PMID: 9620805
  22. Molecular genetics of the RNA polymerase II general transcriptional machinery.
    Microbiol Mol Biol Rev. 1998 Jun;62(2):465-503 PMID: 9618449
  23. Transcription activation via enhanced preinitiation complex assembly in a human cell-free system lacking TAFIIs.
    Mol Cell. 1998 May;1(6):925-31 PMID: 9660976
  24. Histone-like TAFs within the PCAF histone acetylase complex.
    Cell. 1998 Jul 10;94(1):35-44 PMID: 9674425
  25. A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation.
    Cell. 1998 Jul 10;94(1):45-53 PMID: 9674426
  26. TAFII-independent activation mediated by human TBP in the presence of the positive cofactor PC4.
    EMBO J. 1998 Aug 3;17(15):4478-90 PMID: 9687514
  27. Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family.
    Cell. 1998 Jul 24;94(2):239-49 PMID: 9695952
  28. Activated transcription independent of the RNA polymerase II holoenzyme in budding yeast.
    Genes Dev. 1998 Aug 15;12(16):2510-21 PMID: 9716404
  29. The role of TAFs in RNA polymerase II transcription.
    Cell. 1998 Nov 25;95(5):579-82 PMID: 9845358
  30. Dissecting the regulatory circuitry of a eukaryotic genome.
    Cell. 1998 Nov 25;95(5):717-28 PMID: 9845373
  31. Broad, but not universal, transcriptional requirement for yTAFII17, a histone H3-like TAFII present in TFIID and SAGA.
    Mol Cell. 1998 Nov;2(5):653-61 PMID: 9844637
  32. Histone-like TAFs are essential for transcription in vivo.
    Mol Cell. 1998 Nov;2(5):663-73 PMID: 9844638
  33. The histone H3-like TAF is broadly required for transcription in yeast.
    Mol Cell. 1998 Nov;2(5):675-82 PMID: 9844639
  34. yTAFII61 has a general role in RNA polymerase II transcription and is required by Gcn4p to recruit the SAGA coactivator complex.
    Mol Cell. 1998 Nov;2(5):683-92 PMID: 9844640
  35. Transcription. A lesson in sharing?
    Nature. 1998 Dec 3;396(6710):410-1 PMID: 9853742
  36. Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction.
    Mol Cell Biol. 1999 Jan;19(1):86-98 PMID: 9858534
  37. Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes.
    Exp Cell Res. 1999 Jan 10;246(1):11-9 PMID: 9882510
  38. TAFII40 protein is encoded by the e(y)1 gene: biological consequences of mutations.
    Mol Cell Biol. 1999 May;19(5):3769-78 PMID: 10207100
  39. TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family.
    Proc Natl Acad Sci U S A. 1999 Apr 27;96(9):4791-6 PMID: 10220372
  40. A role for TBP dimerization in preventing unregulated gene expression.
    Mol Cell. 1999 Jun;3(6):717-27 PMID: 10394360
  41. SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae.
    Genes Dev. 1992 Jul;6(7):1319-31 PMID: 1628834
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
1999-10-01
Pages
2484-9
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC317065
Subset
IM
Grants
NIGMS NIH HHS · R01 GM046498 · United States
NIGMS NIH HHS · GM46498 · United States
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