Home LiteratureArticle Details
PMID: 10769021 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Dynamics of DNA replication factories in living cells.

The Journal of cell biology ·Vol. 149 ·No. 2 ·2000-04-17 ·Pages 271-80

Leonhardt H, Rahn HP, Weinzierl P, Sporbert A, Cremer T, Zink D, Cardoso MC

Abstract

DNA replication occurs in microscopically visible complexes at discrete sites (replication foci) in the nucleus. These foci consist of DNA associated with replication machineries, i.e., large protein complexes involved in DNA replication. To study the dynamics of these nuclear replication foci in living cells, we fused proliferating cell nuclear antigen (PCNA), a central component of the replication machinery, with the green fluorescent protein (GFP). Imaging of stable cell lines expressing low levels of GFP-PCNA showed that replication foci are heterogeneous in size and lifetime. Time-lapse studies revealed that replication foci clearly differ from nuclear speckles and coiled bodies as they neither show directional movements, nor do they seem to merge or divide. These four dimensional analyses suggested that replication factories are stably anchored in the nucleus and that changes in the pattern occur through gradual, coordinated, but asynchronous, assembly and disassembly throughout S phase.

MeSH Terms
Animals COS Cells Cell Cycle/physiology Cell Line Cell Nucleus/physiology,ultrastructure DNA Replication Green Fluorescent Proteins Humans Kinetics Luminescent Proteins/analysis,genetics Mice Microscopy, Video/methods Muscle, Skeletal Proliferating Cell Nuclear Antigen/genetics,metabolism Recombinant Fusion Proteins/metabolism Transfection
Chemicals
Luminescent Proteins Proliferating Cell Nuclear Antigen Recombinant Fusion Proteins Green Fluorescent Proteins
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Leonhardt H
Max Delbrück Center for Molecular Medicine, D-13125 Berlin, Germany.
Rahn H P
Weinzierl P
Sporbert A
Cremer T
Zink D
Cardoso M C
References (47)
47 references, click to expand
  1. Protein-PCNA interactions: a DNA-scanning mechanism?
    Trends Biochem Sci. 1998 Jul;23(7):236-8 PMID: 9697409
  2. Subdivision of S-phase by analysis of nuclear 5-bromodeoxyuridine staining patterns.
    Cytometry. 1989 Mar;10(2):143-50 PMID: 2469556
  3. Eucaryotic DNA: organization of the genome for replication.
    Cell. 1978 Oct;15(2):317-25 PMID: 719745
  4. Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells.
    J Cell Biol. 1998 Mar 23;140(6):1285-95 PMID: 9508763
  5. Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA.
    Cell. 1996 Oct 18;87(2):297-306 PMID: 8861913
  6. Molecular cloning, structure and expression of the yeast proliferating cell nuclear antigen gene.
    Nucleic Acids Res. 1990 Jan 25;18(2):261-5 PMID: 1970160
  7. Mapping and use of a sequence that targets DNA ligase I to sites of DNA replication in vivo.
    J Cell Biol. 1997 Nov 3;139(3):579-87 PMID: 9348276
  8. Quantitative motion analysis of subchromosomal foci in living cells using four-dimensional microscopy.
    Biophys J. 1999 Nov;77(5):2871-86 PMID: 10545385
  9. Direct imaging of DNA in living cells reveals the dynamics of chromosome formation.
    J Cell Biol. 1999 Mar 8;144(5):813-21 PMID: 10085283
  10. Proliferating cell nuclear antigen: more than a clamp for DNA polymerases.
    Bioessays. 1997 Nov;19(11):967-75 PMID: 9394619
  11. Post-replicative base excision repair in replication foci.
    EMBO J. 1999 Jul 1;18(13):3834-44 PMID: 10393198
  12. The nucleolus.
    Curr Opin Cell Biol. 1994 Jun;6(3):354-9 PMID: 7917325
  13. Localization of cyclin A at the sites of cellular DNA replication.
    Exp Cell Res. 1993 May;206(1):43-8 PMID: 8097727
  14. Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway.
    Curr Biol. 1999 Oct 7;9(19):1065-74 PMID: 10531003
  15. Isolation and analysis of the fission yeast gene encoding polymerase delta accessory protein PCNA.
    EMBO J. 1992 Dec;11(13):5111-20 PMID: 1361173
  16. Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteins.
    J Cell Biol. 1999 Aug 9;146(3):531-42 PMID: 10444063
  17. Protein targeting to subnuclear higher order structures: a new level of regulation and coordination of nuclear processes.
    J Cell Biochem. 1998 Aug 1;70(2):222-30 PMID: 9671228
  18. Spatial and temporal distribution of DNA replication sites localized by immunofluorescence and confocal microscopy in mouse fibroblasts.
    J Cell Sci. 1991 Jun;99 ( Pt 2):247-53 PMID: 1885669
  19. Spatial organization of large-scale chromatin domains in the nucleus: a magnified view of single chromosome territories.
    J Cell Biol. 1997 Dec 29;139(7):1597-610 PMID: 9412456
  20. Cyclin/PCNA is the auxiliary protein of DNA polymerase-delta.
    Nature. 1987 Apr 2-8;326(6112):515-7 PMID: 2882423
  21. Existence of two populations of cyclin/proliferating cell nuclear antigen during the cell cycle: association with DNA replication sites.
    J Cell Biol. 1987 Oct;105(4):1549-54 PMID: 2889739
  22. Nuclear organization of mammalian genomes. Polar chromosome territories build up functionally distinct higher order compartments.
    J Cell Biol. 1999 Sep 20;146(6):1211-26 PMID: 10491386
  23. Eukaryotic expression vectors for the analysis of mutant proteins.
    Nucleic Acids Res. 1989 Aug 11;17(15):6418 PMID: 2549518
  24. DNA replication. A familiar ring to DNA polymerase processivity.
    Curr Biol. 1995 Apr 1;5(4):334-7 PMID: 7627541
  25. Localization of bacterial DNA polymerase: evidence for a factory model of replication.
    Science. 1998 Nov 20;282(5393):1516-9 PMID: 9822387
  26. Eukaryotic chromosome replication.
    Annu Rev Genet. 1975;9:245-84 PMID: 55095
  27. Dynamic elastic behavior of alpha-satellite DNA domains visualized in situ in living human cells.
    J Cell Biol. 1996 Nov;135(3):545-57 PMID: 8909532
  28. Targeting and association of proteins with functional domains in the nucleus: the insoluble solution.
    Int Rev Cytol. 1995;162B:303-35 PMID: 8557490
  29. Interphase chromosomes undergo constrained diffusional motion in living cells.
    Curr Biol. 1997 Dec 1;7(12):930-9 PMID: 9382846
  30. A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nuclei.
    Cell. 1992 Nov 27;71(5):865-73 PMID: 1423634
  31. The movement of coiled bodies visualized in living plant cells by the green fluorescent protein.
    Mol Biol Cell. 1999 Jul;10(7):2297-307 PMID: 10397766
  32. Nuclear RNA tracks: structural basis for transcription and splicing?
    Trends Cell Biol. 1993 Oct;3(10):346-53 PMID: 14731904
  33. Structural organizations of replicon domains during DNA synthetic phase in the mammalian nucleus.
    Exp Cell Res. 1986 Aug;165(2):291-7 PMID: 3720850
  34. Functional identity of proliferating cell nuclear antigen and a DNA polymerase-delta auxiliary protein.
    Nature. 1987 Apr 2-8;326(6112):517-20 PMID: 2882424
  35. Crystal structure of the Aequorea victoria green fluorescent protein.
    Science. 1996 Sep 6;273(5280):1392-5 PMID: 8703075
  36. The dynamics of a pre-mRNA splicing factor in living cells.
    Nature. 1997 May 29;387(6632):523-7 PMID: 9168118
  37. Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences.
    J Cell Biol. 1992 Mar;116(5):1095-110 PMID: 1740468
  38. Visualization of replication factories attached to nucleoskeleton.
    Cell. 1993 Apr 23;73(2):361-73 PMID: 8097433
  39. Mutations that suppress the thermosensitivity of green fluorescent protein.
    Curr Biol. 1996 Dec 1;6(12):1653-63 PMID: 8994830
  40. Inhibition of cellular proliferation by antisense oligodeoxynucleotides to PCNA cyclin.
    Science. 1988 Jun 10;240(4858):1544-6 PMID: 2897717
  41. Heterogeneity of eukaryotic replicons, replicon clusters, and replication foci.
    Chromosoma. 2000 Mar;108(8):471-84 PMID: 10794569
  42. Cell cycle-dependent variations in the distribution of the nuclear protein cyclin proliferating cell nuclear antigen in cultured cells: subdivision of S phase.
    Proc Natl Acad Sci U S A. 1985 May;82(10):3262-6 PMID: 2860667
  43. Reversal of terminal differentiation and control of DNA replication: cyclin A and Cdk2 specifically localize at subnuclear sites of DNA replication.
    Cell. 1993 Sep 24;74(6):979-92 PMID: 8402887
  44. Structure and dynamics of human interphase chromosome territories in vivo.
    Hum Genet. 1998 Feb;102(2):241-51 PMID: 9521598
  45. Identification of 100 and 150 S DNA polymerase alpha-primase megacomplexes solubilized from the nuclear matrix of regenerating rat liver.
    J Biol Chem. 1987 Apr 25;262(12):5857-65 PMID: 3571238
  46. Mapping replicational sites in the eucaryotic cell nucleus.
    J Cell Biol. 1989 Jan;108(1):1-11 PMID: 2910875
  47. Macromolecular domains within the cell nucleus.
    Annu Rev Cell Biol. 1993;9:265-315 PMID: 8280462
Article Info
Journal
The Journal of cell biology
Abbr.
J Cell Biol
ISSN
0021-9525
Published
2000-04-17
Pages
271-80
Language
English
Region
United States
NLM ID
0375356
PMCID
PMC2175147
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]