Abstract
Although the Mutator (Mu) system is well characterized in maize (Zea mays), very little is known about this highly mutagenic system of transposons in other grasses. Mutator is regulated by the MuDR class of elements, which encodes two genes, one of which, mudrA, has similarity to a number of bacterial transposases. Experiments in our laboratory, as well as database searches, demonstrate that mudrA sequences are ubiquitous and diverse in the grasses. In several species it is clear that multiple paralogous elements can be present in a single genome. In some species such as wheat (Triticum aestivum) and rice (Oryza sativa), mudrA-similar sequences are represented in cDNA databases, suggesting the presence of active Mu transposon systems in these species. Further, in rice and in sorghum, mudrA-like genes are flanked by long terminal inverted repeats, as well as the short host sequence direct repeats diagnostic of insertion. Thus, there is ample evidence that systems related to Mu in maize are at least potentially active in a wide variety of grasses. However, the mudrB gene, though important for Mu activity in maize, is not necessarily a component of Mu elements in other grasses.
MeSH Terms
Amino Acid Sequence
Base Sequence
DNA Transposable Elements
Molecular Sequence Data
Phylogeny
Poaceae/enzymology,genetics
Sequence Homology, Amino Acid
Sequence Homology, Nucleic Acid
Species Specificity
Transposases/chemistry,genetics,metabolism
Chemicals
DNA Transposable Elements
Transposases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Lisch D R
Department of Plant and Microbial Biology, 111 Koshland Hall, University of California, Berkeley, CA 94720, USA.
[email protected]
Freeling M
Langham R J
Choy M Y
References (31)
31 references, click to expand
-
Alternative splicing of two leading exons partitions promoter activity between the coding regions of the maize homeobox gene Zmhox1a and Trap (transposon-associated protein).
Plant Mol Biol. 1999 Nov;41(5):615-25
PMID: 10645721
-
Modern thoughts on an ancyent marinere: function, evolution, regulation.
Annu Rev Genet. 1997;31:337-58
PMID: 9442899
-
Multiple Mariner transposons in flatworms and hydras are related to those of insects.
J Hered. 1997 May-Jun;88(3):195-201
PMID: 9183847
-
Phylogenetic structure in the grass family (Poaceae): evidence from the nuclear gene phytochrome B.
Am J Bot. 2000 Jan;87(1):96-107
PMID: 10636833
-
Recent horizontal transfer of a mariner transposable element among and between Diptera and Neuroptera.
Mol Biol Evol. 1995 Sep;12(5):850-62
PMID: 7476131
-
Cloning of the Mutator transposable element MuA2, a putative regulator of somatic mutability of the a1-Mum2 allele in maize.
Genetics. 1991 Nov;129(3):845-54
PMID: 1661256
-
Identification of a regulatory transposon that controls the Mutator transposable element system in maize.
Genetics. 1991 Sep;129(1):261-70
PMID: 1657702
-
Sure facts, speculations, and open questions about the evolution of transposable element copy number.
Genetica. 1999;107(1-3):129-37
PMID: 10952206
-
Phylogenetic analysis supports horizontal transfer of P transposable elements.
Mol Biol Evol. 1994 Jan;11(1):40-50
PMID: 8121285
-
Horizontal transfer and selection in the evolution of P elements.
Mol Biol Evol. 2000 Oct;17(10):1542-57
PMID: 11018160
-
Host defenses to parasitic sequences and the evolution of epigenetic control mechanisms.
Genetica. 1999;107(1-3):271-87
PMID: 10952218
-
The complete sequence of a heterochromatic island from a higher eukaryote. The Cold Spring Harbor Laboratory, Washington University Genome Sequencing Center, and PE Biosystems Arabidopsis Sequencing Consortium.
Cell. 2000 Feb 4;100(3):377-86
PMID: 10676819
-
A maize MuDR-like element expressed in rice callus subcultured with proline.
Hereditas. 1998;129(1):95-9
PMID: 9868931
-
Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.
Genome Res. 2000 Jul;10(7):982-90
PMID: 10899147
-
Relationships of cereal crops and other grasses.
Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2005-10
PMID: 9482825
-
The Mutator transposable element system of maize.
Curr Top Microbiol Immunol. 1996;204:195-229
PMID: 8556867
-
The late developmental pattern of Mu transposon excision is conferred by a cauliflower mosaic virus 35S -driven MURA cDNA in transgenic maize.
Plant Cell. 2000 Jan;12(1):5-21
PMID: 10634904
-
The Wilhelmine E. Key 1991 Invitational Lecture. The evolutionary history of the P family of transposable elements.
J Hered. 1994 Sep-Oct;85(5):339-46
PMID: 7963451
-
mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci.
Plant Cell. 2000 Nov;12(11):2101-18
PMID: 11090212
-
Characterization of the major transcripts encoded by the regulatory MuDR transposable element of maize.
Genetics. 1995 Jul;140(3):1087-98
PMID: 7672579
-
Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences.
Nucleic Acids Res. 1994 Jul 11;22(13):2634-6
PMID: 8041625
-
Retrotransposon evolution in diverse plant genomes.
Genetics. 2000 Sep;156(1):313-25
PMID: 10978295
-
Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins.
Genetics. 1999 Jan;151(1):331-41
PMID: 9872971
-
DNA sequence and transcript analysis of transposon MuA2, a regulator of Mutator transposable element activity in maize.
Plant Mol Biol. 1993 Mar;21(6):1181-5
PMID: 8387832
-
Mutator activity in maize correlates with the presence and expression of the Mu transposable element Mu9.
Proc Natl Acad Sci U S A. 1991 Nov 15;88(22):10198-202
PMID: 1719548
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
Mol Biol Evol. 1986 Sep;3(5):418-26
PMID: 3444411
-
The maintenance of transposable elements in natural populations.
Basic Life Sci. 1988;47:189-212
PMID: 2845912
-
Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences.
Mol Phylogenet Evol. 1997 Oct;8(2):150-66
PMID: 9299221
-
The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling.
Genes Dev. 1999 Aug 1;13(15):2017-27
PMID: 10444599
-
Evidence for horizontal transmission of the P transposable element between Drosophila species.
Genetics. 1990 Feb;124(2):339-55
PMID: 2155157
-
The Mu elements of Zea mays.
Adv Genet. 1992;30:77-122
PMID: 1333722