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PMID: 11752248 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The Ensembl genome database project.

Nucleic acids research ·Vol. 30 ·No. 1 ·2002-01-01 ·Pages 38-41

Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M

Abstract

The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of the human genome sequence, with confirmed gene predictions that have been integrated with external data sources, and is available as either an interactive web site or as flat files. It is also an open source software engineering project to develop a portable system able to handle very large genomes and associated requirements from sequence analysis to data storage and visualisation. The Ensembl site is one of the leading sources of human genome sequence annotation and provided much of the analysis for publication by the international human genome project of the draft genome. The Ensembl system is being installed around the world in both companies and academic sites on machines ranging from supercomputers to laptops.

MeSH Terms
Computational Biology Database Management Systems Databases, Genetic Genome, Human Humans Information Storage and Retrieval Internet Sequence Analysis, DNA Systems Integration
Authors & Affiliations
35 authors, click to expand affiliations / ORCID
Hubbard T
The Wellcome Trust Sanger Institute and European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.
Barker D
Birney E
Cameron G
Chen Y
Clark L
Cox T
Cuff J
Curwen V
Down T
Durbin R
Eyras E
Gilbert J
Hammond M
Huminiecki L
Kasprzyk A
Lehvaslaiho H
Lijnzaad P
Melsopp C
Mongin E
Pettett R
Pocock M
Potter S
Rust A
Schmidt E
Searle S
Slater G
Smith J
Spooner W
Stabenau A
Stalker J
Stupka E
Ureta-Vidal A
Vastrik I
Clamp M
References (14)
14 references, click to expand
  1. Protein interaction maps for complete genomes based on gene fusion events.
    Nature. 1999 Nov 4;402(6757):86-90 PMID: 10573422
  2. The DNA sequence of human chromosome 22.
    Nature. 1999 Dec 2;402(6761):489-95 PMID: 10591208
  3. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
    Nucleic Acids Res. 2000 Jan 1;28(1):45-8 PMID: 10592178
  4. Open annotation offers a democratic solution to genome sequencing.
    Nature. 2000 Feb 24;403(6772):825 PMID: 10706254
  5. Using GeneWise in the Drosophila annotation experiment.
    Genome Res. 2000 Apr;10(4):547-8 PMID: 10779496
  6. OMIM passes the 1,000-disease-gene mark.
    Nat Genet. 2000 May;25(1):11 PMID: 10802643
  7. EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.
    Comput Appl Biosci. 1997 Aug;13(4):477-8 PMID: 9283765
  8. The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
    Nucleic Acids Res. 2001 Jan 1;29(1):37-40 PMID: 11125043
  9. Initial sequencing and analysis of the human genome.
    Nature. 2001 Feb 15;409(6822):860-921 PMID: 11237011
  10. The distributed annotation system.
    BMC Bioinformatics. 2001;2:7 PMID: 11667947
  11. Serial analysis of gene expression.
    Science. 1995 Oct 20;270(5235):484-7 PMID: 7570003
  12. Prediction of complete gene structures in human genomic DNA.
    J Mol Biol. 1997 Apr 25;268(1):78-94 PMID: 9149143
  13. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  14. Database resources of the National Center for Biotechnology Information.
    Nucleic Acids Res. 2001 Jan 1;29(1):11-6 PMID: 11125038
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2002-01-01
Pages
38-41
Language
English
Region
England
NLM ID
0411011
PMCID
PMC99161
Subset
IM
Grants
Wellcome Trust · United Kingdom
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