Home LiteratureArticle Details
PMID: 12634120 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S. Review

Application of genomics to toxicology research.

Environmental health perspectives ·Vol. 110 Suppl 6 ·2002-12-00 ·Pages 919-23

Thomas RS, Rank DR, Penn SG, Zastrow GM, Hayes KR, Hu T, Pande K, Lewis M, Jovanovich SB, Bradfield CA

Abstract

Traditional models of toxicity have relied on dissecting chemical action into pharmacokinetic and pharmacodynamic processes. However, the integration of genomic information with toxicology will enhance our basic understanding of these processes and significantly change the way we apply toxicological information to risk assessment and regulatory problems. In this article, we summarize the application of gene expression information and polymorphism discovery to four areas in toxicology: toxicity testing, cross-species extrapolation, understanding mechanism of action, and susceptibility.

MeSH Terms
Animals Disease Models, Animal Environmental Pollutants/adverse effects Forecasting Gene Expression Regulation Genomics Humans Oligonucleotide Array Sequence Analysis Polymorphism, Genetic Toxicity Tests Toxicology/trends
Chemicals
Environmental Pollutants
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Thomas Russell S
McArdle Laboratory for Cancer Research, University of Wisconsin Medical School, Madison, Wisconsin, USA. [email protected]
Rank David R
Penn Sharron G
Zastrow Gina M
Hayes Kevin R
Hu Tianhua
Pande Kalyan
Lewis Mark
Jovanovich Stevan B
Bradfield Christopher A
References (26)
26 references, click to expand
  1. Knowledge-based analysis of microarray gene expression data by using support vector machines.
    Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):262-7 PMID: 10618406
  2. Sequence variation in the human angiotensin converting enzyme.
    Nat Genet. 1999 May;22(1):59-62 PMID: 10319862
  3. The transcriptional signature of dioxin in human hepatoma HepG2 cells.
    Biochem Pharmacol. 2000 Oct 15;60(8):1129-42 PMID: 11007951
  4. The sequence of the human genome.
    Science. 2001 Feb 16;291(5507):1304-51 PMID: 11181995
  5. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.
    Nature. 2001 Feb 15;409(6822):928-33 PMID: 11237013
  6. Divergent transcriptional responses to independent genetic causes of cardiac hypertrophy.
    Physiol Genomics. 2001 Jun 6;6(1):19-28 PMID: 11395543
  7. Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles.
    Toxicol Appl Pharmacol. 2001 Aug 15;175(1):28-42 PMID: 11509024
  8. Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis.
    Oncogene. 2001 Sep 27;20(43):6196-204 PMID: 11593428
  9. Identification of toxicologically predictive gene sets using cDNA microarrays.
    Mol Pharmacol. 2001 Dec;60(6):1189-94 PMID: 11723225
  10. Prediction of compound signature using high density gene expression profiling.
    Toxicol Sci. 2002 Jun;67(2):232-40 PMID: 12011482
  11. Analysis of gene function in somatic mammalian cells using small interfering RNAs.
    Methods. 2002 Feb;26(2):199-213 PMID: 12054897
  12. An almost unbiased method of obtaining confidence intervals for the probability of misclassification in discriminant analysis.
    Biometrics. 1967 Dec;23(4):639-45 PMID: 6080201
  13. Scaling in biology: the consequences of size.
    J Exp Zool. 1975 Oct;194(1):287-307 PMID: 811757
  14. 2,3,7,8-tetrachlorodibenzo-p-dioxin and related halogenated aromatic hydrocarbons: examination of the mechanism of toxicity.
    Annu Rev Pharmacol Toxicol. 1982;22:517-54 PMID: 6282188
  15. The genetic polymorphism of debrisoquine/sparteine metabolism-molecular mechanisms.
    Pharmacol Ther. 1990;46(2):297-308 PMID: 2181495
  16. Health risk assessment research: the OTA report.
    Environ Health Perspect. 1993 Oct;101(5):402-6 PMID: 8119248
  17. Human and rodent DNA sequence comparisons: a mosaic model of genomic evolution.
    Trends Genet. 1995 Sep;11(9):367-71 PMID: 7482789
  18. Acetaminophen metabolism in patients with different cytochrome P-4502E1 genotypes.
    Alcohol Clin Exp Res. 1996 Feb;20(1 Suppl):25A-28A PMID: 8659683
  19. Workshop overview. National Toxicology Program Studies: principles of dose selection and applications to mechanistic based risk assessment.
    Fundam Appl Toxicol. 1996 May;31(1):1-8 PMID: 8998945
  20. The Environmental Genome Project: functional analysis of polymorphisms.
    Environ Health Perspect. 1998 Jul;106(7):365-8 PMID: 9637792
  21. Human exposure assessment and the National Toxicology Program.
    Environ Health Perspect. 1998 Oct;106(10):623-7 PMID: 9755136
  22. Making medicines safer--the need for an independent drug safety board.
    N Engl J Med. 1998 Dec 17;339(25):1851-4 PMID: 9854125
  23. Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14863-8 PMID: 9843981
  24. Peroxisome proliferator-activated receptors (PPARS) and carcinogenesis.
    Toxicol Sci. 1999 Jan;47(1):1-8 PMID: 10048147
  25. Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation.
    Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2907-12 PMID: 10077610
  26. Functional discovery via a compendium of expression profiles.
    Cell. 2000 Jul 7;102(1):109-26 PMID: 10929718
Article Info
Journal
Environmental health perspectives
Abbr.
Environ Health Perspect
ISSN
0091-6765
Published
2002-12-00
Pages
919-23
Language
English
Region
United States
NLM ID
0330411
PMCID
PMC1241273
Subset
IM
Grants
NCI NIH HHS · CA07175 · United States
NCI NIH HHS · T32CA09681 · United States
NIEHS NIH HHS · ES05703 · United States
NIEHS NIH HHS · R01 ES005703 · United States
NIGMS NIH HHS · GM23750 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]