-
Extensive set of 16S rRNA-based probes for detection of bacteria in human feces.
Appl Environ Microbiol. 2002 Jun;68(6):2982-90
PMID: 12039758
-
Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov.
Int J Syst Evol Microbiol. 2002 May;52(Pt 3):841-9
PMID: 12054248
-
How host-microbial interactions shape the nutrient environment of the mammalian intestine.
Annu Rev Nutr. 2002;22:283-307
PMID: 12055347
-
The extracytoplasmic function (ECF) sigma factors.
Adv Microb Physiol. 2002;46:47-110
PMID: 12073657
-
The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea.
J Mol Microbiol Biotechnol. 2002 Jul;4(4):453-61
PMID: 12125824
-
Oxalobacter formigenes and its potential role in human health.
Appl Environ Microbiol. 2002 Aug;68(8):3841-7
PMID: 12147479
-
Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples.
FEMS Microbiol Lett. 2002 Aug 6;213(2):175-82
PMID: 12167534
-
Gastro-intestinal cell loss in man. Its measurement and significance.
Digestion. 1973;8(2):144-60
PMID: 4736233
-
Human fecal flora: the normal flora of 20 Japanese-Hawaiians.
Appl Microbiol. 1974 May;27(5):961-79
PMID: 4598229
-
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon.
Appl Environ Microbiol. 1977 Feb;33(2):319-22
PMID: 848954
-
Microbial ecology of the gastrointestinal tract.
Annu Rev Microbiol. 1977;31:107-33
PMID: 334036
-
Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon.
Appl Environ Microbiol. 1977 Nov;34(5):529-33
PMID: 563214
-
Encapsulation of Bacteroides species.
Infect Immun. 1978 Mar;19(3):1088-91
PMID: 640724
-
Some current concepts in intestinal bacteriology.
Am J Clin Nutr. 1978 Oct;31(10 Suppl):S33-42
PMID: 707392
-
Role of starch as a substrate for Bacteroides vulgatus growing in the human colon.
Appl Environ Microbiol. 1988 Aug;54(8):1911-6
PMID: 2460027
-
Identification of the sigma E subunit of Escherichia coli RNA polymerase: a second alternate sigma factor involved in high-temperature gene expression.
Genes Dev. 1989 Sep;3(9):1462-71
PMID: 2691330
-
Toxigenic clostridia.
Clin Microbiol Rev. 1990 Jan;3(1):66-98
PMID: 2404569
-
Expert system for predicting protein localization sites in gram-negative bacteria.
Proteins. 1991;11(2):95-110
PMID: 1946347
-
Analysis of two chondroitin sulfate utilization mutants of Bacteroides thetaiotaomicron that differ in their abilities to compete with the wild type in the gastrointestinal tracts of germfree mice.
Appl Environ Microbiol. 1992 Mar;58(3):869-76
PMID: 1575488
-
Intestinal flora during the first months of life: new perspectives.
Br J Nutr. 2002 Sep;88 Suppl 1:S11-8
PMID: 12215177
-
Environmental exposure to endotoxin and its relation to asthma in school-age children.
N Engl J Med. 2002 Sep 19;347(12):869-77
PMID: 12239255
-
Histidine protein kinases: key signal transducers outside the animal kingdom.
Genome Biol. 2002 Sep 25;3(10):REVIEWS3013
PMID: 12372152
-
Angiopoietin-like protein 4 is a potent hyperlipidemia-inducing factor in mice and inhibitor of lipoprotein lipase.
J Lipid Res. 2002 Nov;43(11):1770-2
PMID: 12401877
-
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14422-7
PMID: 12381787
-
Critical roles of activation-induced cytidine deaminase in the homeostasis of gut flora.
Science. 2002 Nov 15;298(5597):1424-7
PMID: 12434060
-
Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells.
Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15451-5
PMID: 12432102
-
Cultivating the uncultured.
Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15681-6
PMID: 12438682
-
Discounting and reciprocity in an Iterated Prisoner's Dilemma.
Science. 2002 Dec 13;298(5601):2216-8
PMID: 12481142
-
Archaea and their potential role in human disease.
Infect Immun. 2003 Feb;71(2):591-6
PMID: 12540534
-
Microarray expression profiling: capturing a genome-wide portrait of the transcriptome.
Mol Microbiol. 2003 Feb;47(4):879-89
PMID: 12581346
-
Angiogenins: a new class of microbicidal proteins involved in innate immunity.
Nat Immunol. 2003 Mar;4(3):269-73
PMID: 12548285
-
Foraging adaptation and the relationship between food-web complexity and stability.
Science. 2003 Feb 28;299(5611):1388-91
PMID: 12610303
-
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis.
Science. 2003 Mar 28;299(5615):2071-4
PMID: 12663927
-
A genomic view of the human-Bacteroides thetaiotaomicron symbiosis.
Science. 2003 Mar 28;299(5615):2074-6
PMID: 12663928
-
Identification of Lactobacillus reuteri genes specifically induced in the mouse gastrointestinal tract.
Appl Environ Microbiol. 2003 Apr;69(4):2044-51
PMID: 12676681
-
Body iron loss and cell loss from epithelia.
Proc R Soc Med. 1970 Dec;63(12):1221-4
PMID: 5490767
-
The COG database: a tool for genome-scale analysis of protein functions and evolution.
Nucleic Acids Res. 2000 Jan 1;28(1):33-6
PMID: 10592175
-
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction.
Nucleic Acids Res. 2000 Jan 1;28(1):123-5
PMID: 10592199
-
Starting a new genetic system: lessons from bacteroides.
Methods. 2000 Jan;20(1):35-46
PMID: 10610802
-
Regulation of the cnr cobalt and nickel resistance determinant of Ralstonia eutropha (Alcaligenes eutrophus) CH34.
J Bacteriol. 2000 Mar;182(5):1399-409
PMID: 10671464
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Nat Genet. 2000 May;25(1):25-9
PMID: 10802651
-
Sequence analysis of bacterial DNA in the colon and stomach of the Tyrolean Iceman.
Am J Phys Anthropol. 2000 Jul;112(3):297-309
PMID: 10861348
-
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen.
Nature. 2000 Aug 31;406(6799):959-64
PMID: 10984043
-
Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles.
Gut. 2001 Feb;48(2):198-205
PMID: 11156640
-
The XylS/AraC family of regulators.
Nucleic Acids Res. 1993 Feb 25;21(4):807-10
PMID: 8451183
-
Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria.
J Bacteriol. 1994 Feb;176(3):725-32
PMID: 8300528
-
The algT (algU) gene of Pseudomonas aeruginosa, a key regulator involved in alginate biosynthesis, encodes an alternative sigma factor (sigma E).
Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7941-5
PMID: 7644517
-
Transcription of the region encoding the ferric dicitrate-transport system in Escherichia coli: similarity between promoters for fecA and for extracytoplasmic function sigma factors.
Gene. 1995 Sep 22;163(1):13-8
PMID: 7557462
-
An rpoE-like locus controls outer membrane protein synthesis and growth at cold temperatures and high pressures in the deep-sea bacterium Photobacterium sp. strain SS9.
Mol Microbiol. 1995 Aug;17(4):713-26
PMID: 8801425
-
A model of host-microbial interactions in an open mammalian ecosystem.
Science. 1996 Sep 6;273(5280):1380-3
PMID: 8703071
-
The indigenous gastrointestinal microflora.
Trends Microbiol. 1996 Nov;4(11):430-5
PMID: 8950812
-
Effect of regulatory protein levels on utilization of starch by Bacteroides thetaiotaomicron.
J Bacteriol. 1996 Dec;178(24):7180-6
PMID: 8955400
-
Intestinal flora and endogenous vitamin synthesis.
Eur J Cancer Prev. 1997 Mar;6 Suppl 1:S43-5
PMID: 9167138
-
The complete genome sequence of Escherichia coli K-12.
Science. 1997 Sep 5;277(5331):1453-62
PMID: 9278503
-
Lipoprotein lipase controls fatty acid entry into adipose tissue, but fat mass is preserved by endogenous synthesis in mice deficient in adipose tissue lipoprotein lipase.
Proc Natl Acad Sci U S A. 1997 Sep 16;94(19):10261-6
PMID: 9294198
-
Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation.
Microbiol Mol Biol Rev. 1998 Mar;62(1):204-29
PMID: 9529892
-
Eubacterial sigma-factors.
FEMS Microbiol Rev. 1998 Sep;22(3):127-50
PMID: 9818380
-
Crystal structure of the outer membrane active transporter FepA from Escherichia coli.
Nat Struct Biol. 1999 Jan;6(1):56-63
PMID: 9886293
-
Regulation of symbiotic root nodule development.
Annu Rev Genet. 1998;32:33-57
PMID: 9928474
-
Biotransformation of monoterpenes, bile acids, and other isoprenoids in anaerobic ecosystems.
FEMS Microbiol Rev. 1998 Dec;22(5):475-88
PMID: 9990726
-
Developmental microbial ecology of the neonatal gastrointestinal tract.
Am J Clin Nutr. 1999 May;69(5):1035S-1045S
PMID: 10232646
-
The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides.
Trends Microbiol. 1999 Jul;7(7):275-81
PMID: 10390637
-
A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem.
Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9833-8
PMID: 10449780
-
The Pathway Tools software.
Bioinformatics. 2002;18 Suppl 1:S225-32
PMID: 12169551
-
Microbial cellulose utilization: fundamentals and biotechnology.
Microbiol Mol Biol Rev. 2002 Sep;66(3):506-77, table of contents
PMID: 12209002
-
Molecular analysis of commensal host-microbial relationships in the intestine.
Science. 2001 Feb 2;291(5505):881-4
PMID: 11157169
-
Massive gene decay in the leprosy bacillus.
Nature. 2001 Feb 22;409(6823):1007-11
PMID: 11234002
-
Ecological developmental biology: developmental biology meets the real world.
Dev Biol. 2001 May 1;233(1):1-12
PMID: 11319853
-
Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis.
Infect Immun. 2001 Jul;69(7):4342-50
PMID: 11401972
-
Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron.
J Bacteriol. 2001 Dec;183(24):7224-30
PMID: 11717282
-
Enterococci. Habitats, infections, virulence factors, resistances to antibiotics, transfer of resistance determinants.
Contrib Microbiol. 2001;8:108-22
PMID: 11764728
-
The KEGG databases at GenomeNet.
Nucleic Acids Res. 2002 Jan 1;30(1):42-6
PMID: 11752249
-
The EcoCyc Database.
Nucleic Acids Res. 2002 Jan 1;30(1):56-8
PMID: 11752253
-
The MetaCyc Database.
Nucleic Acids Res. 2002 Jan 1;30(1):59-61
PMID: 11752254
-
Molecular monitoring of succession of bacterial communities in human neonates.
Appl Environ Microbiol. 2002 Jan;68(1):219-26
PMID: 11772630
-
Unseen forces: the influence of bacteria on animal development.
Dev Biol. 2002 Feb 1;242(1):1-14
PMID: 11795936
-
Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.
Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):996-1001
PMID: 11792842
-
Unsuspected diversity among marine aerobic anoxygenic phototrophs.
Nature. 2002 Feb 7;415(6872):630-3
PMID: 11832943
-
Characterization of omp200, a porin gene complex from Bacteroides fragilis: omp121 and omp71, gene sequence, deduced amino acid sequences and predictions of porin structure.
Gene. 2002 Jan 23;283(1-2):95-105
PMID: 11867216
-
Effect of antimicrobial agents on the ecological balance of human microflora.
Lancet Infect Dis. 2001 Sep;1(2):101-14
PMID: 11871461
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity.
Genome Res. 2002 Apr;12(4):532-42
PMID: 11932238
-
Volunteering as Red Queen mechanism for cooperation in public goods games.
Science. 2002 May 10;296(5570):1129-32
PMID: 12004134
-
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.
Nature. 2002 May 23;417(6887):459-63
PMID: 12024217