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PMID: 14708549 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

High positive supercoiling in vitro catalyzed by an ATP and polyethylene glycol-stimulated topoisomerase from Sulfolobus acidocaldarius.

The EMBO journal ·Vol. 4 ·No. 8 ·1985-08-00 ·Pages 2123-8

Forterre P, Mirambeau G, Jaxel C, Nadal M, Duguet M

Abstract

A topoisomerase able to introduce positive supercoils in a closed circular DNA, has been isolated from the archaebacterium Sulfolobus acidocaldarius. This enzyme, fully active at 75 degrees C, performed in vitro positive supercoiling either from negatively supercoiled, or from relaxed DNA in a catalytic reaction. In the presence of polyethylene glycol (PEG 6000), this reaction became very fast and highly processive, and the product was positively supercoiled DNA with a high superhelical density (form I+). Very low (5 - 10 micromoles) ATP concentrations were sufficient to support full supercoiling; the nonhydrolyzable analogue adenosine-5' -0-(3-thiotriphosphate) also sustained the production of positive supercoils, but to a lesser extent, suggesting that ATP hydrolysis was necessary for efficient activity. Nevertheless, low residual of positive supercoiling occurred, even in the absence of ATP, when the substrate was negatively supercoiled. Finally, the different ATP-driven topoisomerizations observed, i.e., relaxation of negative supercoils and positive supercoiling, in all cases increased the linking number of DNA in steps of 1, suggesting the action of a type I, rather than a type II topoisomerase.=

MeSH Terms
Adenosine Triphosphate/metabolism DNA Topoisomerases, Type II/metabolism DNA, Archaeal/chemistry,metabolism DNA, Circular/chemistry,metabolism Enzyme Activation/drug effects Nucleic Acid Conformation/drug effects Polyethylene Glycols/pharmacology Sulfolobus acidocaldarius/genetics,metabolism
Chemicals
DNA, Archaeal DNA, Circular Polyethylene Glycols Adenosine Triphosphate DNA Topoisomerases, Type II
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Forterre P
Institut J. Monod, Université Paris VII, 2, place Jussieu, 75230 Paris Cedex 05, France.
Mirambeau G
Jaxel C
Nadal M
Duguet M
References (27)
27 references, click to expand
  1. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  2. Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature.
    Arch Mikrobiol. 1972;84(1):54-68 PMID: 4559703
  3. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  4. Energy coupling in DNA gyrase and the mechanism of action of novobiocin.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4838-42 PMID: 368801
  5. E. coli DNA binding protein HU forms nucleosomelike structure with circular double-stranded DNA.
    Cell. 1979 Jun;17(2):265-74 PMID: 222478
  6. DNA gyrase and the supercoiling of DNA.
    Science. 1980 Feb 29;207(4434):953-60 PMID: 6243420
  7. A highly sensitive silver stain for detecting proteins and peptides in polyacrylamide gels.
    Anal Biochem. 1979 Sep 15;98(1):231-7 PMID: 94518
  8. Single-strand deoxyribonucleic acid binding protein from rat liver changes the helical structure of deoxyribonucleic acid.
    Biochemistry. 1981 Jun 9;20(12):3598-603 PMID: 6266457
  9. A homogeneous type II DNA topoisomerase from HeLa cell nuclei.
    J Biol Chem. 1981 Sep 10;256(17):9334-9 PMID: 6267071
  10. DNA topoisomerases.
    Annu Rev Biochem. 1981;50:879-910 PMID: 6267993
  11. Inhibition of DNA replication in vitro by pefloxacin.
    FEBS Lett. 1982 Aug 23;145(2):355-9 PMID: 6751875
  12. Drosophila topoisomerase I: isolation, purification and characterization.
    Nucleic Acids Res. 1982 Nov 11;10(21):6945-55 PMID: 6294622
  13. DNA topoisomerases from rat liver: physiological variations.
    Nucleic Acids Res. 1983 Feb 25;11(4):1059-75 PMID: 6298730
  14. DNA supercoiling and its effects on DNA structure and function.
    Cold Spring Harb Symp Quant Biol. 1983;47 Pt 1:85-91 PMID: 6345067
  15. DNA topoisomerase II from Drosophila melanogaster. Purification and physical characterization.
    J Biol Chem. 1983 Aug 10;258(15):9530-5 PMID: 6308010
  16. Macromolecular crowding allows blunt-end ligation by DNA ligases from rat liver or Escherichia coli.
    Proc Natl Acad Sci U S A. 1983 Oct;80(19):5852-6 PMID: 6351067
  17. Effects of ATP and inhibitory factors on the activity of vaccinia virus type I topoisomerase.
    J Virol. 1984 Jan;49(1):1-8 PMID: 6317884
  18. Supercoiling and the mechanism of restriction endonucleases.
    Eur J Biochem. 1984 Jan 16;138(2):275-80 PMID: 6321170
  19. DNA supercoiling and gene expression.
    Nature. 1984 Feb 23-29;307(5953):686-7 PMID: 6321994
  20. Chromatin assembly in Xenopus oocytes: in vivo studies.
    Cell. 1984 May;37(1):21-32 PMID: 6202419
  21. Reverse gyrase--a topoisomerase which introduces positive superhelical turns into DNA.
    Nature. 1984 Jun 21-27;309(5970):677-81 PMID: 6328327
  22. The purification and characterization of DNA topoisomerases I and II of the yeast Saccharomyces cerevisiae.
    J Biol Chem. 1984 Aug 25;259(16):10422-9 PMID: 6088500
  23. Nonintercalative antitumor drugs interfere with the breakage-reunion reaction of mammalian DNA topoisomerase II.
    J Biol Chem. 1984 Nov 10;259(21):13560-6 PMID: 6092381
  24. Polymer-stimulated ligation: enhanced ligation of oligo- and polynucleotides by T4 RNA ligase in polymer solutions.
    Nucleic Acids Res. 1984 Nov 12;12(21):8235-51 PMID: 6504699
  25. Torsional stress promotes the DNAase I sensitivity of active genes.
    Cell. 1984 Dec;39(3 Pt 2):469-78 PMID: 6096006
  26. ATP-dependent DNA topoisomerase from the archaebacterium Sulfolobus acidocaldarius. Relaxation of supercoiled DNA at high temperature.
    J Mol Biol. 1984 Nov 5;179(3):559-63 PMID: 6096554
  27. Biology of bacterial deoxyribonucleic acid topoisomerases.
    Microbiol Rev. 1984 Dec;48(4):273-89 PMID: 6097803
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1985-08-00
Pages
2123-8
Language
English
Region
England
NLM ID
8208664
PMCID
PMC554472
Subset
IM
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