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LiteratureArticle Details
PMID: 14968263
Published · ppublish
English
Comparative Study
Journal Article
Research Support, Non-U.S. Gov't
Comparative analysis of 5,211 leaf ESTs of wild rice (Oryza minuta).
Abstract
The expressed sequence tags (ESTs) presented in this report are the first transcriptomes of wild rice. A cDNA library was constructed from 4-week-old leaf samples of greenhouse-grown Oryza minuta. The 5,211 cDNA clones of O. minuta represent 3,401 unique sequences, consisting of 2,787 singletons and 614 assembled sequences. Database comparisons of the cDNAs in GenBank's non-redundant databases using BLAST revealed that 4,957 of the 5,211 cDNAs (95.1%) showed a high degree of sequence homology to genes from other organisms. Most of the transcripts identified were genes related to metabolism, energy, protein biosynthesis and subcellular localization. The metabolism and energy categories of the O. minuta ESTs showed a considerably higher gene expression level than those of O. sativa ESTs. These data and genes can be utilized in rice breeding.
MeSH Terms
Arabidopsis/genetics
Base Sequence
Expressed Sequence Tags
Gene Expression Profiling
Gene Library
Molecular Sequence Data
Oryza/genetics
Plant Leaves/genetics
Sequence Analysis, DNA
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Article Info
Journal
Plant cell reports
Abbr.
Plant Cell Rep
ISSN
0721-7714
Published
2004-06-00
Epub
2004-00-17
Pages
839-47
Language
English
Region
Germany
NLM ID
9880970
Subset
IM
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